FMO01077.5prime Sequence
1201 bp (967 high quality bases) assembled on 2008-02-20
> FMO01077.5prime
CAGTCGACATGGCAAAGTCGACACTTTATGCTGCTGGGGTGACCTGTCTG
GGCTTTATTTGCTTCGCCTTGGCATCTGTGGCCATTGGCATACCCATTTG
GGGTTACTACGATAGTCCATCGGGCGGCTATGACTTCGATCGAGGTTATT
TCGGACCGTTTAAGGTCTGCAAGCAATTGACTTATAATCGCGAGAAATGC
GGCAACGACGTGTCCAAGTTTAGATTAAGTAATGCGGTTTTTGTCAGTGG
ACTCTTGGCCATTGGCAGCTCAGCTGTGCTGGGCATCTTCTGCATTCTGT
CGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGGTTATGCCC
TACACAACTCTAGTGATAGTGAAGTTAATGTTGGCATTGCTGGGAGGTGT
ACTGGCCATCATAGCGACGGTTTTGTTTGCTCTGCAAATTGATGAGCAGG
AGCGCTATGGCTTCAAGATATCGCGGGGCATTTCCTTCTATATACAGATT
GTGGCTATTGTTTTGACAATTGCTCTGTTCGTGGCCGCCCTGTACGATGT
GATCTACTCGCGCAGTCCAGGCGGAGATCCCACAATGGCGCTGGATGTGT
CATCTCCGGGCAGTGCCACTACGTTCAATAATCCTGGTTTCAAGGAGCCT
CGCAGTCGCAACGGCGTTTCGGTGACGGACGCATCCGGTAAGCCCTACAG
CGGAATCCGGAATGGAGCGGGAACGGCGGGCAGCGTGGCCTCCATGAGCA
CCACCGTGACCAGCGTGTCCAATGGATCCACCCTTGACTCGGTGACTCGT
TCACCGCTGCGATCGAGTCTGAGAGCCGAGACCACGGCCGGATCCAACGT
TAGGCATTCAAATCCCGGCTATTTCTGGATCCGGAGCTCGCACCTATGCG
CGCAATGGAAGCGTGAAGAAGGTCCGAATTCAGACGCACAGCACCGAGGT
GGCCAGCTTTCTTAGACCATCGTTGGCGCGCGGGGCCCAGGTAGTGGTAT
AATCATAATCATATCCTATCATAATCCCAACCTAGCCTAGGAGATCCTGT
CATGACTATGGCTGATCTCACCAATAAAAACGCCTGGCGACGACGTTCGA
CAATCGATGGAATTTGAGCTTATCGAATTATCACGGATCACGATCGATCA
TAGCGCCTGCCTCTGAATCGTGAATCTAGCCATTCGCCGCACTGGGACAT
C
FMO01077.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13698-RC | 1617 | CG13698-RC | 616..1565 | 7..951 | 4580 | 99.3 | Plus |
| CG13698-RB | 2418 | CG13698-RB | 702..1651 | 7..951 | 4580 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18089184..18089646 | 951..494 | 1990 | 98.3 | Minus |
| 3L | 28110227 | 3L | 18090009..18090176 | 399..232 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 18090447..18090564 | 124..7 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 18090279..18090387 | 231..123 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 18089846..18089948 | 497..395 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:17 has no hits.
FMO01077.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:32 Download gff for
FMO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 676..1636 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:04 Download gff for
FMO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1655 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:43 Download gff for
FMO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1655 | 1..956 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:43 Download gff for
FMO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18089180..18089642 | 498..956 | 97 | <- | Minus |
| 3L | 18089846..18089946 | 397..497 | 100 | <- | Minus |
| 3L | 18090012..18090176 | 232..396 | 100 | <- | Minus |
| 3L | 18090279..18090386 | 124..231 | 100 | <- | Minus |
| 3L | 18090448..18090571 | 1..123 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:04 Download gff for
FMO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18083548..18083671 | 1..123 | 97 | | Minus |
| arm_3L | 18082280..18082742 | 498..956 | 97 | <- | Minus |
| arm_3L | 18082946..18083046 | 397..497 | 100 | <- | Minus |
| arm_3L | 18083112..18083276 | 232..396 | 100 | <- | Minus |
| arm_3L | 18083379..18083486 | 124..231 | 100 | <- | Minus |
