FMO01079.5prime Sequence
1242 bp (750 high quality bases) assembled on 2008-03-07
> FMO01079.5prime
AAAGACGAAGTTATCAGTCGACATGGAGAGTGCCCTGCCGGTGGTCGAGT
TTCAGCAGATAAAGCTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCT
CAGCCGCCAGTGAGCCTTCGCCTGAAGCATAAAAATACTTCTGCCACCAC
AAAGACAACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCTGA
GTGAGTACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCC
GAGGAGATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCT
GCCGCCAGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGC
CTCTCAATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCATCGAG
ACCCCGGATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGG
AAAGAAGTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAG
AACAAATCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAACGAT
GCCACGCAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCCACTC
GATGATGAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGC
CCGTGGGTCTGGGATGGTATGGCATTACGAAATCCACTCAGCAGAAGCTC
TTCCCTATGGGATCCGCCCAACAACACAGATGTGTAGGAATCCATCAAGC
GGGTAAGGACGATGACTCCAAGCTGATTGACCTCAACTGAACAACATTAA
TAAACATCTCGGACGAGAACTCGAGCAACTGTTTGCCGCACTGCCTCAGA
ACGAATTTGGCAGTCCTCTCGCTAACAAATGTGGCCTAACGAACGAGACA
GCCCTCCTGTTAGCCGCGTCATAGAAGAAGCAAAACCCTGACAGTATTAA
TGTCGAGACCACCTTTATCATCCGCCCGTGATTGTTAAGTTGGGGCAATG
CCTTGCTTCAATGCCCACCCATCGAGGAGTTAGGCCTTCAATCAGCGCCT
GCGGTCCGGCACAGATTCAGATGGATCACCGACCTGATGGAAAAAACTCT
TCCCTGCCTGTGCCCTTGCCTGAACTGAATTTAAGCAGCTGGCATCGATT
CCCCTCACCCTTCACGTACTTTCTCACGGATATACCGTGTTGTAAGGCTC
CTGTGATACACCGACGCTAATACGAAAGTGACCTTTACTGTT
FMO01079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RB | 2508 | CG1539-RB | 160..1261 | 23..1107 | 4500 | 95.2 | Plus |
| tmod-RJ | 2753 | CG1539-RJ | 519..1506 | 137..1107 | 3945 | 94.8 | Plus |
| tmod-RI | 3000 | CG1539-RI | 766..1753 | 137..1107 | 3945 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572534 | 290..800 | 2370 | 98.8 | Plus |
| 3R | 32079331 | 3R | 30571809..30571962 | 137..290 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 30571316..30571429 | 23..136 | 555 | 99.1 | Plus |
| 3R | 32079331 | 3R | 30572599..30572834 | 803..1031 | 500 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:23 has no hits.
FMO01079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:08 Download gff for
FMO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1539-RB | 150..1261 | 13..1107 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:45 Download gff for
FMO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 150..1261 | 13..1107 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:44 Download gff for
FMO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 150..1261 | 13..1107 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:44 Download gff for
FMO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30572023..30572535 | 290..802 | 98 | -> | Plus |
| 3R | 30571306..30571429 | 13..136 | 96 | -> | Plus |
| 3R | 30571809..30571961 | 137..289 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:45 Download gff for
FMO01079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26397745..26398257 | 290..802 | 98 | -> | Plus |
| arm_3R | 26397028..26397151 | 13..136 | 96 | -> | Plus |
| arm_3R | 26397531..26397683 | 137..289 | 100 | -> | Plus |
