FMO01080.5prime Sequence
701 bp (701 high quality bases) assembled on 2008-03-07
> FMO01080.5prime
AGAGGGCAAAGTTATCAGTCGACATGGCAACCACTCCACGCAGCGGCGGG
GCCAGCGGCACTGGAACGGCGCAGCGGCCCAATGGCACCTCGCAGAACAA
AAGCTGCCAATTCAAGTTGGTGCTCCTCGGCGAGTCCGCTGTGGGCAAGT
CCTCACTGGTGCTGCGCTTCGTCAAGGGACAGTTCCACGAGTACCAGGAG
AGCACGATAGGTGCGGCCTTTCTGACACAGACTATTTGCATAGAGGACAC
TGTCGTTAAGTTCGAGATCTGGGACACGGCTGGCCAGGAGCGGTACCACA
GCTTAGCTCCCATGTATTATCGAGGAGCGCAGGCCGCTATTGTCGTCTAT
GATATACAGAATCAGGACAGTTTTCAGCGTGCGAAGACCTGGGTCAAGGA
ACTGCATAAACAAGCCTCACCAAACATTGTCATTGCGCTGGTCGGCAACA
AGGCAGATTTGTCAAACATTCGCGTCGTAGAGTTCGATGAAGCGAAGCAA
TATGCCGAGGAGAACGGGCTGCTGTTCATGGAAACCTCCGCCAAGACGGG
CATGAATGTGAACGACATCTTCTTGGCCATTGCCAAGAAACTACCTAAGA
ACGATGGCGCCAACAATCAGGGAACCCAGCATAAGGTCGACTGGAACCGA
AACAAATCGACCGACGAACAACTGCTTGCAAGGCAAGCTTTTCTAGACCA
T
FMO01080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab5-RI | 1775 | CG3664-RI | 274..931 | 23..682 | 3205 | 99.2 | Plus |
| Rab5-RH | 1772 | CG3664-RH | 275..932 | 23..682 | 3205 | 99.2 | Plus |
| Rab5-RG | 1785 | CG3664-RG | 284..941 | 23..682 | 3205 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2361157..2361429 | 295..23 | 1350 | 99.6 | Minus |
| 2L | 23513712 | 2L | 2360633..2360801 | 582..414 | 830 | 99.4 | Minus |
| 2L | 23513712 | 2L | 2360971..2361093 | 414..292 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 2360477..2360570 | 676..582 | 410 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:29 has no hits.
FMO01080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:10 Download gff for
FMO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3664-RE | 250..911 | 20..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:45 Download gff for
FMO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RG | 280..941 | 20..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:45 Download gff for
FMO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RG | 280..941 | 20..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:45 Download gff for
FMO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2361160..2361433 | 20..292 | 99 | | Minus |
| 2L | 2360472..2360569 | 583..682 | 97 | <- | Minus |
| 2L | 2360633..2360801 | 414..582 | 99 | <- | Minus |
| 2L | 2360972..2361092 | 293..413 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:45 Download gff for
FMO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2360972..2361092 | 293..413 | 100 | <- | Minus |
| arm_2L | 2360472..2360569 | 583..682 | 97 | <- | Minus |
| arm_2L | 2360633..2360801 | 414..582 | 99 | <- | Minus |
| arm_2L | 2361160..2361433 | 20..292 | 99 | | Minus |
