FMO01081.5prime Sequence
818 bp (344 high quality bases) assembled on 2008-03-07
> FMO01081.5prime
AAAAACTAAGTTATCAGTCGACATGACACATCAGGGCATCCCCTGCCTGG
TCAAGTGGTTATATCTGGTGCTGATCGTGCACACGCTCCTCTGCATCGGC
CAGCTCGAGTGTCGCCAGCAGCACCACAATCGGAATAACAATAATAATAA
CAGAAGAGCGGACTCTTCCAGCTCAGAGGAGGGCCACGGCAACACCAGCG
ATGGCGTGGACAACTTCGCAAATCAGGACGCCAGCTTCTTTGGCCATGGA
CACCAGCCGCGTCGGGGTCAACGAAAGAAACAGCAGGGAGGTGGAGGAGG
AGGCAGCGGCGGCGGCGGCGGAAACGGAGGAGGCGGTGGAAGCCTGCACA
ATCGCAACGAGGAGAGCGGTATCTCGTTGTGGATCAATGAGCAGCAGCTC
AAAATGCTTACAGCGCTCTACTTCCCACAGGGCTACTCGGATCGCCTGTA
CGCCATTCACAACAGCCGGGTGACCAATGATCTGAGGGACACGACGCTGT
ACAACTTCCTGGTAATCCCATCGGAGGTCAACTACGTTAACTTCACATGG
AAGTCGGGGCGCCGCAAATACTTCTACGACTTTGACCGCCTGCAGACCAT
GGATGAAAGTATCTTGAAGGCGCCAACGCTGTCCCATTCGCAAGAGCGGA
CGCATTCCGCATGAGCTGATAAATTTTTAGCTTATTCCTGCCCTGCACCG
GCAAAAAGCTCCGGCACCGCGTCCTTCAACGTCGGTCTTAAAATTCCAAA
CGCGCTACAACAAAGCCGCTTCTCGGGCACACCCATTCCCCTCAACTTCA
AAAAAGATTGCGCCCACA
FMO01081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shf-RD | 1745 | CG3135-RD | 261..1050 | 23..818 | 3500 | 96.5 | Plus |
| shf-RC | 1733 | CG3135-RC | 261..1050 | 23..818 | 3500 | 96.5 | Plus |
| shf-RB | 1796 | CG3135-RB | 261..1050 | 23..818 | 3500 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6774561..6774951 | 413..23 | 1835 | 98 | Minus |
| X | 23542271 | X | 6774189..6774444 | 666..410 | 1205 | 98.8 | Minus |
| X | 23542271 | X | 6773969..6774108 | 818..675 | 370 | 90.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:25:30 has no hits.
FMO01081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:11 Download gff for
FMO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3135-RA | 261..1049 | 23..817 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:19 Download gff for
FMO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RB | 261..1049 | 23..817 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:44 Download gff for
FMO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RB | 261..1049 | 23..817 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:44 Download gff for
FMO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6774183..6774440 | 414..673 | 98 | <- | Minus |
| X | 6774561..6774951 | 23..413 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:19 Download gff for
FMO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6668216..6668473 | 414..673 | 98 | <- | Minus |
| arm_X | 6668594..6668984 | 23..413 | 97 | | Minus |
