FMO01082.5prime Sequence
1224 bp (699 high quality bases) assembled on 2008-03-07
> FMO01082.5prime
AAAGGAAAAGTTATCAGTCGACATGTGGTCGCCGCGGGTTGCCCTACTTT
TCCTGGCCCTAGCACTTAGCCAACCGGACGAGTTGGTGGAGGCCGCTGGT
CCGCTGAAGGTGCTGGGTCTTTTTCCCCATCCCGGAGTTAGCCACTTCCA
CTTCTTCCACCCCATCATGAAGGGTCTGGCCGAGGCGGGTCATGACGTGA
GCGTGGTTTCCCACTTCCCGGACAAGCATCCGGTTGCCCACTACAAGGAT
TTCCCCCTCACCGGAATGGACAAGCTCACGAACAGTGTTGATCTCAAGTT
TTTCGAGAAGCGCACATTCTACAGTCACTTCCAGGAGTTCTTCTTGTTGT
ACGACTGGGGCAAACAGACATGCAACCTGACGCTCCGTTCGGAAGCACTG
CAGCAGATCCTCAGGCGTCCGGGACGCTTTGATGTGATCATCATGGAGCA
ATTCAACACTGACTGCATGATGGGAGTGGCCCACCAGCTCCAGGCGCCGG
TGATCGCCTTGAGCAGCTGTGTGATGATGCCCTGGCACTACGAGCGAATG
GGAGCTCCTTTGATACCCTCTCACATCCCGGCGCTCTTCATGGCCCAGTC
GCAGCACATGAACTTTGGGGGACGACTGGCCATTGGTTCAGCACCCACGC
CTTAAATTGGATGTACAAATTACTATCGGTTCCCGCTGCCGACGCCATGG
TTCAATACAAATTCGGCCATGACGTGCCTTTCGGTGGGCGAGCTGGTGAA
GAACACATCCATGTTCTTTGTGAACCATCACTACTCGCTGTCTGGACACA
AAGTAACGCCGCCCAATGTCATCGAGCTGGGTGGCATCCACTTCCAAAAA
TCGAAGCCTCTGCCTGCCGATCTGCACGCATTCTGGATATGCTTGAGGAA
GGATGATCCTTAATTGCTGGGGATCAATGATCGGGCGATTTCCCTGCCGG
CGCGAAATGAATGCATAATTCGGGCGGTGGCCTCAATAAAGTCGAACGTT
ATCCGGAAATCGGAAAAACGACTCTTGCTAACCGCTCTACTTTGCCAATT
AGTGAGGTATGCCAACCGCAATCTTGTCATCCCAAGCCAGTGGTTTCTGT
CTACGCGGAATCTTGGGCCCTTGGAAAGCACTTCTGTGAGATCTCAAGTG
TTCCACCCTATTATGGATACTTTTTGCCATTCGCGCCGTTGTCGAACGAG
CCTGGATATCTACCTCGTAATTTC
FMO01082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17323-RD | 2212 | CG17323-RD | 140..1140 | 23..1017 | 4360 | 96.4 | Plus |
| CG17323-RC | 1988 | CG17323-RC | 79..1079 | 23..1017 | 4360 | 96.4 | Plus |
| CG17323-RE | 2112 | CG17323-RE | 203..1203 | 23..1017 | 4360 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18824795..18825167 | 297..668 | 1785 | 99.2 | Plus |
| 2L | 23513712 | 2L | 18824306..18824581 | 23..298 | 1380 | 100 | Plus |
| 2L | 23513712 | 2L | 18825234..18825587 | 669..1017 | 1010 | 89.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:39 has no hits.
FMO01082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:24:29 Download gff for
FMO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17323-RA | 31..1010 | 23..996 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:21 Download gff for
FMO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17323-RE | 203..1182 | 23..996 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:08 Download gff for
FMO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17323-RE | 203..1182 | 23..996 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:08 Download gff for
FMO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18824300..18824581 | 13..298 | 97 | -> | Plus |
| 2L | 18824797..18825167 | 299..668 | 99 | -> | Plus |
| 2L | 18825234..18825566 | 669..996 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:21 Download gff for
FMO01082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18824300..18824581 | 13..298 | 97 | -> | Plus |
| arm_2L | 18824797..18825167 | 299..668 | 99 | -> | Plus |
| arm_2L | 18825234..18825566 | 669..996 | 91 | | Plus |
