FMO01083.5prime Sequence
622 bp (606 high quality bases) assembled on 2008-02-20
> FMO01083.5prime
CAGTCGACATGGCGAACATGGCAGTGTCCCGGATCAAGCGGGAGTTCAAG
GAGGTGATGCGCAGCGAGGAGATCGTCCAGTGTTCCATCAAAATCGAACT
GGTCAATGACAGTTGGACGGAGCTGCGCGGCGAGATCGCCGGTCCGCCTG
ACACGCCCTACGAGGGCGGCAAGTTCGTCCTGGAGATCAAGGTGCCCGAG
ACATATCCCTTCAATCCACCAAAGGTACGCTTCATAACGCGCATCTGGCA
TCCGAATATATCGTCGGTTACGGGTGCGATTTGCTTGGACATCTTAAAGG
ACAACTGGGCTGCAGCGATGACACTGCGCACCGTACTGCTGTCGCTGCAG
GCGCTCCTGGCCGCCGCAGAGCCGGACGATCCACAGGACGCAGTGGTGGC
CTATCAGTTTAAGGACAAGTACGATCTGTTCCTGCTTACGGCCAAGCACT
GGACCAACGCGTATGCGGGCGGACCGCACACCTTTCCCGATTGTGATTCA
AAGATCCAACGTCTCAGGGACATGGGCATCGACTAGCATGAGGCGCGCGC
CGTGCTCTCCAAGGACAATTGAAATTTGGAGAAGGCCACCGAGGGCCTGT
TCAGTGCAGCTTTCTAGACTAT
FMO01083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc4-RC | 1709 | CG8284-RC | 357..954 | 8..605 | 2930 | 99.3 | Plus |
| Ubc4-RB | 1473 | CG8284-RB | 357..954 | 8..605 | 2930 | 99.3 | Plus |
| Ubc4-RA | 1107 | CG8284-RA | 357..954 | 8..605 | 2930 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9699344..9699726 | 223..605 | 1870 | 99.2 | Plus |
| 3L | 28110227 | 3L | 9698964..9699123 | 70..229 | 800 | 100 | Plus |
| 3L | 28110227 | 3L | 9698692..9698755 | 8..71 | 305 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:32 has no hits.
FMO01083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:31 Download gff for
FMO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8284-RA | 348..954 | 1..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:59 Download gff for
FMO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD4-RA | 354..960 | 1..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:50 Download gff for
FMO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc4-RA | 354..960 | 1..612 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:50 Download gff for
FMO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9698689..9698755 | 1..71 | 92 | -> | Plus |
| 3L | 9698966..9699118 | 72..224 | 100 | -> | Plus |
| 3L | 9699346..9699732 | 225..612 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:59 Download gff for
FMO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9691789..9691855 | 1..71 | 92 | -> | Plus |
| arm_3L | 9692066..9692218 | 72..224 | 100 | -> | Plus |
| arm_3L | 9692446..9692832 | 225..612 | 98 | | Plus |
