FMO01085.5prime Sequence
1176 bp (313 high quality bases) assembled on 2008-03-07
> FMO01085.5prime
GAGGGGCAAAGTTATCAGTCGACATGATCCTGCTGGAAATAAAGGCGGAT
TATCGAGGAGACGCTGCTGGTCAAATACCGTAATGCCCAGGCTGGACTCA
AGCCTGAATCGATACACATACGAATAGCAGACTTCGACGGCGTCCTTTAT
CACATTTCCAATGTGAATGGCGATAAAACAAAAGTTCGGATCAGCATATC
GCTGAAGTTCTACAAACAGCTGCAAGAACATGGAGCCGACGAGTTGCTGA
AGCGTGAATATGGCAGTCTGCTTACAGACACGGAAGAAGGCTACAATGTT
TCCGTACTTATCAACCTAGAGGAGATTCCCGAGGACTGCGATCAAATTGC
AAAGAGAATCGGACTGCTGAAGCGCAACTGTTTCACATCGGTTTTTGAAA
AGTATTTTGACTATCAGGAGCAGGGCGAAGAGGGCCAAAAGCGTGCCGTC
ATTAACTACCGCAACGATGAGATTTTATATGTGGAAGCCAAGCCTGATCG
TGTCACCGTCGTCTTTAGTACCATTTTCCGGGACGAAGACGATGTCATTA
TCGGCAAATTATTTATGCATGAATTGAGGGAAGGTCGGCGTGCCTCGCAC
ACCGCACCACAAGTGCTCTTTTCGCACCGAGAACCACCATTGGAATTGGC
CAACACGGACGCTAGGGTGGGCGACAACATTGGCTATGTCACATTCGTAC
TCTTCCCTTCGGCATACCAACAAAGAAACAAGGGACAATACCATTAACTT
ATTTCACATGTTCCGAGATTACTTGCACTACCACATTTAAGTGTTCAAAG
GCTTACATTTCATTCGCGCATGCGAGCAAAAACCTCGGATTTCCTTCAAG
GTGCTAAATCGTGCAATGCCAGAGCCCAAAAATCACCGAGTAGAAAACTA
TAACGAGGAAAACTTTTCAGGCGCATCGAAGCAGCTTTCCTAGACCATTC
GGTTTGGTAGCGCGGGGCCCAGTTAGGTGACCTAATCCTTATCTTTAATC
CTTATTCATAATTACAGACTAGCCCAAGGAAATCTTGGTCCAGGACTAGG
GGTCTGTGAATTCTCACACCAATTAAAAACGCCCCGGGCGGGCAATCGGG
AGCGGTTCTGGAACTAATTTCGAGAAGGGTAGTCTGCGGAGGTCTCTTAT
CATGGGAATTTTATTACCAGGGAGAT
FMO01085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc2-RB | 1974 | CG10954-RB | 537..1439 | 23..929 | 4075 | 97.1 | Plus |
| Arpc2-RA | 1941 | CG10954-RA | 504..1406 | 23..929 | 4075 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20420897..20421117 | 477..697 | 1075 | 99.1 | Plus |
| 2L | 23513712 | 2L | 20420646..20420834 | 288..476 | 870 | 97.4 | Plus |
| 2L | 23513712 | 2L | 20420489..20420590 | 189..290 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 20420318..20420412 | 95..189 | 445 | 97.9 | Plus |
| 2L | 23513712 | 2L | 20422144..20422233 | 697..787 | 390 | 97.8 | Plus |
| 2L | 23513712 | 2L | 20422300..20422412 | 790..905 | 385 | 94.8 | Plus |
| 2L | 23513712 | 2L | 20417593..20417667 | 23..95 | 265 | 93.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:22 has no hits.
FMO01085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:15 Download gff for
FMO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10954-RA | 525..1435 | 15..929 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:05 Download gff for
FMO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc2-RA | 525..1435 | 15..929 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:07 Download gff for
FMO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc2-RA | 496..1406 | 15..929 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:07 Download gff for
FMO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20417585..20417667 | 15..95 | 91 | -> | Plus |
| 2L | 20420319..20420412 | 96..189 | 97 | -> | Plus |
| 2L | 20420490..20420589 | 190..289 | 100 | -> | Plus |
| 2L | 20420648..20420834 | 290..476 | 97 | -> | Plus |
| 2L | 20420897..20421117 | 477..697 | 99 | -> | Plus |
| 2L | 20422145..20422236 | 698..791 | 96 | -> | Plus |
| 2L | 20422302..20422412 | 792..905 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:05 Download gff for
FMO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20417585..20417667 | 15..95 | 91 | -> | Plus |
| arm_2L | 20420319..20420412 | 96..189 | 97 | -> | Plus |
| arm_2L | 20420490..20420589 | 190..289 | 100 | -> | Plus |
| arm_2L | 20420648..20420834 | 290..476 | 97 | -> | Plus |
| arm_2L | 20420897..20421117 | 477..697 | 99 | -> | Plus |
| arm_2L | 20422145..20422236 | 698..791 | 96 | -> | Plus |
| arm_2L | 20422302..20422412 | 792..905 | 94 | == | Plus |
