FMO01088.5prime Sequence
1230 bp (1023 high quality bases) assembled on 2008-02-20
> FMO01088.5prime
CAGTCGACATGCCCATTTACGAGAGCGTGATGCAGGAGAAGCCGCCCATT
GTCCTCGACATTGGCACCGCCTACACCAAGCTGGGATTCGCAGCGGAGGC
GTATCCGCGCAAGATCATGCCCACGGAGGTGGTGATGACCACGACGGGGA
TCCGGAAGCGTCTGTTCGACTACGACACTCCGGAGGAGCTGTACGACCAG
CTAGTGGATTTTCTGCAGACGATCTTCTTCAAGCATCTACTGGTCAGCCC
CAAGGAGCGCAAGTTCGTGCTGGTGGAGAACGTGTTCGGATCCACTGTGC
TGCGTGAAACCTTGGCCCGCGTGCTCTTTGTCCACTTCGACGTCTCCTCC
GTGCTGTTCGTGCCCGTGCATCTCATTGCGCTGTCTACGCTGGCAGTGCC
CACTGCCCTTGTGGTGGACGTTGGTTACAGCGAGACCAGCGTTATGCCCG
TCTTCAGCGGGGTGCAAATCATGGCCGCCTTCAAGGATCAGAGCTACGGA
GGCAGCGCCATCCACGCGGAGATCAAGCGGCAGCTGGTTGAGAGTGGCGT
TAAGGAGAGCCTGCTAACAGAAAGCGTGCTGGAGGACATCAAGGTGCGAA
CCTGCTTTGTGACCACCATGGAAAGAGCCAAGGCCCGCGCCAACGGCGAC
GAGAATCAGCCGACTCCCGCGCCAGACGTGGACTACATTGTCAGCGACAA
CGATGCGGTCATCCAGGTGCCCGGCCTCCTGCGGGAGTCTGCCTACGAGA
TCATGTTCGAGGCCAGCAACGAGCGGGACAGCCTGCCGCATCTCATCCTG
CGCTCCATTCTCGACTGCACACTAGACGTGCGACGTGCCCTGATCGAGAG
TGTGTTCCTCGTGGGCGGCGGCTCATGGTCCAGGGTCTGCTGGCTCGCCT
CCGCCAGGAGCTGCAGCATCTGCTCACCGAGGATCCGTTCTACGCCGAAC
GCTTCCATGCGAGCTGCAGTTCAAGTTTTCATGCTGTCGGCAAGCAAACT
TTACTGCCTGGCTGGGCGGCGCCTGGGGCGGGGCGACGGATCTCCATCCA
ACCCGATCGCTGGTCAAGGAAGACGGTATCTAAGAGCGAGCCGGTTCCGA
CTGGACACCTTTGTGATAATAGGCCGACGGTCGCAGCTTCCAGACATCGT
TGGCCGCGGGCAGGTAATTCCTATCTAACTATTAATCTAATCAACTTTGC
CTAGGAACCTGTGCTCAGACTAGGTCGTGT
FMO01088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp10-RB | 1536 | CG12235-RB | 261..1387 | 9..1128 | 5160 | 97.9 | Plus |
| Arp10-RA | 1374 | CG12235-RA | 99..1225 | 9..1128 | 5160 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19644740..19645582 | 1070..233 | 3805 | 97.9 | Minus |
| X | 23542271 | X | 19645632..19645785 | 233..80 | 770 | 100 | Minus |
| X | 23542271 | X | 19645845..19645916 | 80..9 | 360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1107..1189 | 988..908 | 112 | 64.3 | Minus |
FMO01088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:33 Download gff for
FMO01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12235-RA | 123..1267 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:33 Download gff for
FMO01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp10-RA | 91..1235 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:19 Download gff for
FMO01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp10-RA | 91..1235 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:19 Download gff for
FMO01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19644670..19645582 | 233..1136 | 97 | <- | Minus |
| X | 19645633..19645785 | 80..232 | 100 | <- | Minus |
| X | 19645846..19645924 | 1..79 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:33 Download gff for
FMO01088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19538703..19539615 | 233..1136 | 97 | <- | Minus |
| arm_X | 19539666..19539818 | 80..232 | 100 | <- | Minus |
| arm_X | 19539879..19539957 | 1..79 | 96 | | Minus |
