FMO01089.5prime Sequence
654 bp (654 high quality bases) assembled on 2008-02-20
> FMO01089.5prime
CAGTCGACATGCCAGTGAAAAAGCAAGAAGCTCATCGGGCTCTCGAGCTG
CTCGAGGACTACCACGCGAGACTTTCGGAGCCGCAGGATCGGGCGCTGCG
TATTGCAATCGAACGCGTTATACGCATATTTAAATCTCGCTTGTTTCAAG
CGCTGTTAGATATACAAGAATTCTATGAATTGACATTATTGGATGACTCG
AAGAGCATACAACAAAAGACAGCGGAGACCTTGCAAATTGCAACCAAATG
GGAAAAGGATGGCCAGGCAGTCAAAATAGCTGATAATCAGCGCATGCGCA
TCGAATCGGACACGGAAAATGCCAAGGAGCCAACTGTCGAGCAGCAGCAA
AAGCAGCAGCAAGCGCAGCAGCGCAGTTCCCGCTCCCCGCAGCAGCAGAA
TCCGCAGCAGCAGCAGGGATCCAAATCGAGGAGCGGGTCCCAGACTTCAC
AGATACAGATACAGTCACTTACACAGACATACCCAAACGCACACCAGCGC
AAGCGAGTCCTCGTGAGCCTCCATCCACATCAACATCAACATCAAAGCCA
AATTCAACACCAACACCATTACCAACTTCGCCATAACAACGGCATTCAAG
CCAAAATGCTTAAGCGCGCTTTTGAGTCCACCGCAAGCTTTCTAGACCAT
TCGC
FMO01089.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlg1-RI | 2114 | CG1725-RI | 371..994 | 9..632 | 3120 | 100 | Plus |
| dlg1-RJ | 2102 | CG1725-RJ | 359..982 | 9..632 | 3120 | 100 | Plus |
| dlg1-RC | 2554 | CG1725-RC | 811..1434 | 9..632 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11387986..11388171 | 447..632 | 930 | 100 | Plus |
| X | 23542271 | X | 11387772..11387933 | 285..446 | 810 | 100 | Plus |
| X | 23542271 | X | 11376840..11376973 | 26..159 | 670 | 100 | Plus |
| X | 23542271 | X | 11381854..11381980 | 158..284 | 635 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2538 | 320..576 | 222 | 57.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 549..634 | 522..606 | 130 | 62.8 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1930..1997 | 537..604 | 123 | 68.1 | Plus |
FMO01089.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:10 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:18 Download gff for
FMO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RC | 805..1440 | 1..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:19 Download gff for
FMO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RC | 805..1440 | 1..641 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:19 Download gff for
FMO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11376842..11376973 | 28..159 | 100 | -> | Plus |
| X | 11381856..11381980 | 160..284 | 100 | -> | Plus |
| X | 11387772..11387933 | 285..446 | 100 | -> | Plus |
| X | 11387986..11388177 | 447..641 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:18 Download gff for
FMO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11270875..11271006 | 28..159 | 100 | -> | Plus |
| arm_X | 11275889..11276013 | 160..284 | 100 | -> | Plus |
| arm_X | 11281805..11281966 | 285..446 | 100 | -> | Plus |
| arm_X | 11282019..11282210 | 447..641 | 97 | | Plus |
