FMO01092.5prime Sequence
1058 bp (886 high quality bases) assembled on 2008-03-07
> FMO01092.5prime
AAAAACAAAGTTATCAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGT
CCTTTGGCTTCAAGAAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGC
AAAAAGGAAACCAGCAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGAC
CAAAGGCAAAGCCAGTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCA
CGAATCCCAACTTCCAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAG
GCGGGAGGAGTTGGTGATGATGGCTCATCCTCAGCCTCCGACGATGATAA
ACTGGGCATTGCGTACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCC
AAGATCAGGGAGCTACATCGATTAACGAAATGGACACAGAATTGGATCGC
GATGCGCAGGCAATTCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGA
GGGCAAGGCGGACGATAAGATCTATCGCGGAATTAACAACTATGCGCAGT
ACTACAAGAAGCAGGATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTA
CGAAGTGGCCCAATTAGGGCTCCTGCCTATCTTAGGGCCACTGTCAGGTG
GGATTATCAGCCGGATATATGCAAGGATTACAAGGAAAACAGGATATTGC
GGCTTTGGCGACAGCTGTAAGTTTCTGCACGATCGCAGTGATTACAAAGC
GGGCTGGCAATTGGAAATGGATCACGAAAATCAGCGAACGGGTGATGTAG
ACTCCGATGGCGATGATACCAAGTATGAGATTCACTCCGATGAAGAAACA
CTGCCTTTCAGTGCCACATCTGCCGACAGAGGTTTGTCAATCCCGTGGAT
AACAAAGTGCAAGCACTATTTCTGTGAAAGGTGCGCCTTGGCCCAATACA
AAAAGTCCACAGCGCTGCATCATCCTGTTCCCAGCAAACAATTGGTATTT
TTCATCCCCGCCAAAGAACTGATACCTCCCCTCAAGACAACCTAATGAAA
ATTCGATAGTGATGAAGGAAGAGGAATTTGGGCAAAAGGAGGATAAGCCG
AAGCAGGG
FMO01092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdlc-RA | 1419 | CG4973-RA | 107..1141 | 23..1058 | 4705 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20058017..20058737 | 128..848 | 3480 | 99.4 | Plus |
| 3R | 32079331 | 3R | 20057854..20057959 | 23..128 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 20058812..20059000 | 857..1046 | 440 | 89.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:40 has no hits.
FMO01092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:18 Download gff for
FMO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4973-RA | 103..1139 | 20..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:25 Download gff for
FMO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4973-RA | 105..1141 | 20..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:49 Download gff for
FMO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mdlc-RA | 105..1141 | 20..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:49 Download gff for
FMO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20057852..20057959 | 20..128 | 99 | -> | Plus |
| 3R | 20058018..20058744 | 129..856 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:25 Download gff for
FMO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15883574..15883681 | 20..128 | 99 | -> | Plus |
| arm_3R | 15883740..15884466 | 129..856 | 99 | -> | Plus |
