FMO01101.5prime Sequence
1230 bp (678 high quality bases) assembled on 2008-03-04
> FMO01101.5prime
CAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATATTCTGCCTT
GCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGCCAGATCAG
CAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAACTGCACCG
TGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTCCCAGCGAG
TCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTCAGTCTGCC
CGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGACCGGAAGTG
CCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACATGGGTCCG
TACGAGTGTGTGGGGGTTGTTTCGGCCACGGAGAAGGTGACCAAGAAGCT
GAGCCTGCAGATCAAGACCCCGTCGGTGATTGCGGAGAACACCCCCAAGA
GCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCCATGCCAAT
GGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAATGCAGTGAT
GCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCCGGATTCGTTCC
GTGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGAACGGAGA
GGGCCCGCCGGACAAGAGGTTGATCCGGGGCCGAAGTGGAGTTCCGTCCG
CAGATTGCCGTCCAGAGGCCAAGATCGCCCAAATGGTGTCCCATTCCGCG
GAGCTGGAGTGCTCCGTGCAGGCTACCCGGCTCCGACTGTAGTTTGGCAC
AAAATGGGCGTGCCTCTGCAGTCTAGCCGGCACCACAAGTGGCCAACACC
GCCTCCTCCTCGGGAACCACAACTTCTGTGGTTGCGCATCATAGCGTGGG
CAGGAGGATTTTGGGGACTACTACTGCAATGCTCCCATAAGTGGGACACG
CGATGCGCGACTGCTTTTCTTCAGACCGTCATCCAGTGCCCTTCTTGTCG
GCAGCTTTTCTAAACCATTCGTTTGGGCGCCGCGGGCCCGGTAAGTGGGT
CATAATTCATATTCTATAATCATATACTAAATCCCACTAGCTCAAGGGAA
TCTTGGTATGGAACTATGGTTTGGATTCTCTACAATAAAACGGCCGGGGC
GCACCCGAGGGTTCGAACCATTCGAATGGGATTCAGAGAGGCTATACGTT
GGAATCTCTATTCCACGAGGAAGAGTCACG
FMO01101.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ama-RC | 1526 | CG2198-RC | 102..1103 | 6..1000 | 4400 | 96.8 | Plus |
| Ama-RA | 1542 | CG2198-RA | 118..1119 | 6..1000 | 4400 | 96.8 | Plus |
| Ama-RB | 1833 | CG2198-RB | 409..1410 | 6..1000 | 4400 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6763837..6764838 | 6..1000 | 4075 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:26 has no hits.
FMO01101.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:37 Download gff for
FMO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2198-RC | 98..1101 | 1..1000 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:32 Download gff for
FMO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1410 | 1..1000 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:40 Download gff for
FMO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1410 | 1..1000 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:40 Download gff for
FMO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6763830..6764838 | 1..1000 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:32 Download gff for
FMO01101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2589552..2590560 | 1..1000 | 96 | == | Plus |
