Clone FMO01104 Report

Search the DGRC for FMO01104

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:4
Vector:pMK33-CFH-BD
Associated Gene/TranscriptOte-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01104.5prime Sequence

1202 bp (750 high quality bases) assembled on 2008-03-04

> FMO01104.5prime
CAGTCCACATGGCCGATGTGGACGATTTTGATTCTCTGTCCAATGCTGAG
TTGCGCGCCAAGATGCTGGCACAGGGGCTGCCCAACATCCCCGTGACGGA
TAGCAGCCGGAAGGTTCTAGTAAAGCGTCTGCGCGCCTCCATTGGTGGCC
AGGCGTCGCCGGCCGCTAGTCCCAAGAAGACCAACAGGCGGGAGACCCTG
GCTCCCGCACCTGGTGCACCATCTGCTCCGGCGGCAGCCTCCACGCCGGT
GGACAAGCTGGATGGCAACAAGGTGGCGCCCGCCACAAAGGCTCGGCGCA
CAATTACCGCTGCAGAGGCCAAGGAACCAGTGCGTCGATTACCCGAGGAA
GCTATACGTCGAGGCCCCGACGAAGCTGACCGCCTACGATCCGAGGAGCC
CGTTGCCGCCAGGAAGCCAATAACTGCTCCTGCTGCTCAACCCGTACAGA
CCCGGCGCACTTCCACCTCCTCGGGGTCTGAAAGGAAAGTAGTGGAGCCC
TTGAGGAAGCCAGAAATCATTGTTGAGCAACCGGCTTCCTCGAAGCGCGC
TGATCGAGAGGAGAATTATCTTAAGGTCAACTCCCTGATTGTCCTAGAGT
CCGATGAAGAAGAGGACGAGCAGCTAGTCCAGGCTGCAGATCTGGTGGAG
CAGGAGCACGCGGCCAGACAGAAGACCACGAAGCTCGCAAGCAGCGGCAC
CACTACGTACGAGTACAAAAGCAAGGTTGTGGAGCCTCCACGCCGACAGG
TCTATGAAGCGACAGCAGCTCTCGTGCTGCCGCCATCTGTGCCATCTGCC
AGAGCGCAGACCACCAGTTTCACCAGGTCCTATGACTATGCGAGCAACTC
AGCACTCGGTCGCTATAGCAGTTTTGTGCGTACTGCAGCCCAAGGCTATG
TGACTGCAGAGGCTTCGCCGGTGGCCTACTACTCATCAGCTACAAGTCGT
ACTATGCTAACGAGCTGAGCGACGATCCTGATTCAAGGAAGACCAGTACG
AATAGCCCATTGGCAGGAATCTAGCTCGGTTGCGAGCCGAACGAATGGAG
AATCCATCAGTGGAATTCAGACGACATTGGGCAGGAAAACGCGGGGAGCG
GTTCTCGCATGAGCCAGGGCAGGGGCTCTTGGCGAAGTAAACCGAATCCG
AGCCTTACGTTGGTGGAACGCCTGAACAAAAATATCCACTCACAGTCACA
TC

FMO01104.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ote-RA 1571 CG5581-RA 99..1203 9..1106 4840 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18276043..18277079 1043..9 4695 97.3 Minus
Blast to na_te.dros performed on 2014-11-28 21:27:31 has no hits.

FMO01104.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:39 Download gff for FMO01104.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5581-RA 109..1232 1..1115 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:23 Download gff for FMO01104.5prime
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 93..1216 1..1115 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:22 Download gff for FMO01104.5prime
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 93..1216 1..1115 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:22 Download gff for FMO01104.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18275962..18277085 1..1115 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:23 Download gff for FMO01104.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14163467..14164590 1..1115 96   Minus