FMO01106.5prime Sequence
1240 bp (923 high quality bases) assembled on 2008-03-04
> FMO01106.5prime
CAGTCGACATGGCCAGTTTCCAGATCCACCAAGACATGAGCAACAAGGAG
AATCCGGGCATTAAGATTCCGGCCGGAGTGAAGAACACCAAGCAGCCGCT
GGCCGTAATTGGGGGAAAAGCGGAGAAAAATGCGCTTGCGCCGCGGGCCA
ATTTCGCCGTGCTCAATGGCAACAACAATGTGCCGCGTCCGGCCGGGAAA
GTTCAGGTCTTCCGTGACGTCAGAAATCTTAATGTTGATGAGAATGTGGA
GTACGGCGCCAAGAAATCGAATGTGGTGCCCGTGGTGGAGCAATTCAAGA
CCTTCTCCGTGTATGAGGACAACAACGATACCCAGGTTGCGCCATCCGGC
AAATCCCTGGCCTCGCTAGTCGACAAAGAGAACCATGACGTGAAATTCGG
TGCTGGGCAGAAGGAGCTGGTAGACTACGATCTGGATTCAACACCCATGT
CCGTGACGGATGTTCAGTCCCCCATGTCCGTGGACCGCTCCATTCTCGGT
GTCATACAGTCCAGTGATATCAGCGTGGGCACTGAAACGGGAGTCTCGCC
AACTGGAAGAGTCAAGGAGCTTCCGCCGCGCAACGATCGCCAGCGGTTCC
TGGAAGTGGTTCAGTACCAGATGGACATTCTGGAATATTTCCGGGAGAGC
GAGAAGAAACATCGCCCCAAGCCACTCTATATGCGCAGACAGAAGGACAT
TAGCCACAATATGCGCTCCATCCTTATTGATTGGCTGGTTGAGGTTTCCG
AGGAGTACAAACTGGACACGGAGACGCTCTATCTCTCGGTCTTTTATCTA
GATCGATTTTTGAGCCAAATGGCGGTGGTGCGCTCCAAGTTACAGCTGGT
GGGCACGGCAGCTATGTATATTGCCGCAAATACGAGGAAATCTATCCCCA
GAGGTCGGTGAGTTTGTCTTCCTCACGACGACGTTACACCAAGGCGCAGT
GGCTACGCATGGAGCAGGTTATCTTGAAGATTCTCTCCTTCGATTCTGTG
CCACCGACTGCTAACGTCTTCATCAAACCCTTATGGCTGTACTTGGCGAC
ATGCCTGAAAAGCTGAAGTACTGGACGCCTGTAATTTCCGAGTGCGCTCA
TGGAGGGAGAACGTACTTGCATATTTGCATCACTATGTCATTCGCCTCAA
TGCACCTGGGCGTCCATTGGCATGGATGGAGCGAAGGCTGAGAGATTCGA
CTCTACAAGCTGGAGAACCATAATAGGGTGGGGTGGTCTA
FMO01106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycA-RA | 2555 | CG5940-RA | 510..1741 | 8..1219 | 5200 | 96.1 | Plus |
| CycA-RC | 2916 | CG5940-RC | 510..1738 | 8..1219 | 5145 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11831727..11831982 | 653..398 | 1280 | 100 | Minus |
| 3L | 28110227 | 3L | 11828461..11828686 | 877..652 | 1130 | 100 | Minus |
| 3L | 28110227 | 3L | 11832874..11833069 | 203..8 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 11832053..11832246 | 397..204 | 955 | 99.5 | Minus |
| 3L | 28110227 | 3L | 11828190..11828391 | 1078..878 | 545 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:05 has no hits.
FMO01106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:45 Download gff for
FMO01106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5940-RA | 501..1616 | 1..1111 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:41 Download gff for
FMO01106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycA-RA | 502..1617 | 1..1111 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:15 Download gff for
FMO01106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycA-RA | 502..1617 | 1..1111 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:15 Download gff for
FMO01106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11828191..11828392 | 878..1077 | 91 | <- | Minus |
| 3L | 11828461..11828684 | 654..877 | 100 | <- | Minus |
| 3L | 11831727..11831982 | 398..653 | 100 | <- | Minus |
| 3L | 11832053..11832246 | 204..397 | 99 | <- | Minus |
| 3L | 11832874..11833072 | 1..203 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:41 Download gff for
FMO01106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11821291..11821492 | 878..1077 | 91 | <- | Minus |
| arm_3L | 11821561..11821784 | 654..877 | 100 | <- | Minus |
| arm_3L | 11824827..11825082 | 398..653 | 100 | <- | Minus |
| arm_3L | 11825153..11825346 | 204..397 | 99 | <- | Minus |
| arm_3L | 11825974..11826172 | 1..203 | 98 | | Minus |
