FMO01108.5prime Sequence
630 bp (366 high quality bases) assembled on 2008-03-04
> FMO01108.5prime
ATAAAACAAAGTTATCAGTCGACATGGCCAAAACCTACAATTATTTGTTC
AAACTGCTCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTT
CCGATTCTCTGAGGACGCTTTCAACACAACGTTTATATCCACAATAGGTA
TCGATTTTAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTG
CAGATATGGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGC
CTATTACAGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAG
AAAAGTCCTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAAT
GCGTCCGCCGATGTCCAGAAAATGCTGCTGGGAAACAAGTGCGAATTGAC
CGATAACCGACAGGTTTCAAAAGAGCGCGGCGAACCATTGGCCATCGAGT
ATGGCATCAAGTTCATGGACACCTCCGCGAAGGCCAGCATTAACGTGGAA
GAAGCCTTCCTCACCCTACCCAGTGATATCAAAGCGAAACGGACAAGCGA
ATGTAGGCGAACATCCACCCAAGGGCGCCCTTCATTGAACCTATGGAAGT
CGGACGAAGGACAGTTGGCCGTCCAGGTGG
FMO01108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 2043 | CG8287-RC | 575..1185 | 24..629 | 2660 | 96.2 | Plus |
Rab8-RA | 2263 | CG8287-RA | 575..1185 | 24..629 | 2660 | 96.2 | Plus |
Rab8-RB | 1068 | CG8287-RB | 50..538 | 146..629 | 2110 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19869101..19869308 | 415..208 | 1010 | 99 | Minus |
3L | 28110227 | 3L | 19868724..19868866 | 553..412 | 605 | 96.5 | Minus |
3L | 28110227 | 3L | 19870379..19870504 | 149..24 | 570 | 96.8 | Minus |
3L | 28110227 | 3L | 19869367..19869430 | 209..146 | 320 | 100 | Minus |
X | 23542271 | X | 20252275..20252409 | 185..319 | 315 | 82.2 | Plus |
X | 23542271 | X | 20251640..20251759 | 30..149 | 210 | 78.3 | Plus |
3R | 32079331 | 3R | 21114776..21114868 | 200..292 | 180 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:53 has no hits.
FMO01108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:46 Download gff for
FMO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8287-RA | 546..1164 | 16..630 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:39 Download gff for
FMO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1185 | 16..630 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:46 Download gff for
FMO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1185 | 16..630 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:46 Download gff for
FMO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19868718..19868864 | 414..556 | 94 | <- | Minus |
3L | 19869103..19869307 | 209..413 | 99 | <- | Minus |
3L | 19869368..19869428 | 148..208 | 100 | <- | Minus |
3L | 19870381..19870510 | 16..147 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:39 Download gff for
FMO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19861818..19861964 | 414..556 | 94 | <- | Minus |
arm_3L | 19862203..19862407 | 209..413 | 99 | <- | Minus |
arm_3L | 19862468..19862528 | 148..208 | 100 | <- | Minus |
arm_3L | 19863481..19863610 | 16..147 | 93 | | Minus |