Clone FMO01108 Report

Search the DGRC for FMO01108

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRab8-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01108.5prime Sequence

630 bp (366 high quality bases) assembled on 2008-03-04

> FMO01108.5prime
ATAAAACAAAGTTATCAGTCGACATGGCCAAAACCTACAATTATTTGTTC
AAACTGCTCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTT
CCGATTCTCTGAGGACGCTTTCAACACAACGTTTATATCCACAATAGGTA
TCGATTTTAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTG
CAGATATGGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGC
CTATTACAGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAG
AAAAGTCCTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAAT
GCGTCCGCCGATGTCCAGAAAATGCTGCTGGGAAACAAGTGCGAATTGAC
CGATAACCGACAGGTTTCAAAAGAGCGCGGCGAACCATTGGCCATCGAGT
ATGGCATCAAGTTCATGGACACCTCCGCGAAGGCCAGCATTAACGTGGAA
GAAGCCTTCCTCACCCTACCCAGTGATATCAAAGCGAAACGGACAAGCGA
ATGTAGGCGAACATCCACCCAAGGGCGCCCTTCATTGAACCTATGGAAGT
CGGACGAAGGACAGTTGGCCGTCCAGGTGG

FMO01108.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 2043 CG8287-RC 575..1185 24..629 2660 96.2 Plus
Rab8-RA 2263 CG8287-RA 575..1185 24..629 2660 96.2 Plus
Rab8-RB 1068 CG8287-RB 50..538 146..629 2110 96.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19869101..19869308 415..208 1010 99 Minus
3L 28110227 3L 19868724..19868866 553..412 605 96.5 Minus
3L 28110227 3L 19870379..19870504 149..24 570 96.8 Minus
3L 28110227 3L 19869367..19869430 209..146 320 100 Minus
X 23542271 X 20252275..20252409 185..319 315 82.2 Plus
X 23542271 X 20251640..20251759 30..149 210 78.3 Plus
3R 32079331 3R 21114776..21114868 200..292 180 79.6 Plus
Blast to na_te.dros performed on 2014-11-28 19:25:53 has no hits.

FMO01108.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:46 Download gff for FMO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8287-RA 546..1164 16..630 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:39 Download gff for FMO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1185 16..630 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:46 Download gff for FMO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1185 16..630 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:46 Download gff for FMO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19868718..19868864 414..556 94 <- Minus
3L 19869103..19869307 209..413 99 <- Minus
3L 19869368..19869428 148..208 100 <- Minus
3L 19870381..19870510 16..147 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:39 Download gff for FMO01108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19861818..19861964 414..556 94 <- Minus
arm_3L 19862203..19862407 209..413 99 <- Minus
arm_3L 19862468..19862528 148..208 100 <- Minus
arm_3L 19863481..19863610 16..147 93   Minus