Clone FMO01111 Report

Search the DGRC for FMO01111

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:11
Vector:pMK33-CFH-BD
Associated Gene/TranscriptREG-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01111.5prime Sequence

821 bp (787 high quality bases) assembled on 2008-03-04

> FMO01111.5prime
TTTAATACGAAGTTATCAGTCGACATGCCTAACGACACTGTGGTAAAGGT
GCAGGAGTACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCTAATCACCA
AGGGGTTCCCGGAGAATATCGTCCGGCTGAACGAGCTGCTGGCCACGCCG
ATCTTCAACGAGCGCAACTTCGAAGAAGTGCACCAGGACCTCAACATCCC
GGTCCTGCCGCCTCTCCTGGTTAAAAACGAGTTGGAGGATCGTGACAGTC
TGCCCACCAAGCGCCAGCGCGTGGATGTCATCGTCTCTGGGCAGCCTGTC
ATGGGTCTGCCCGCCGGTACAGTGCCGTGCAACAAGCCGCTCTGCGAGAT
GATCAAGGTCGTCAAGCCTATCATTAGTAGGGGGTGTGGAGGATTCCAAT
CTACTTAAGATGTGGATCTCCTTTATGATACCCAAGATCGAGGATGGCAA
CAACTTTGGCGTCTCCATTCAAGAGGACACGCTTGCCGAAATTCAAACTG
TGGAATCCGAGGCGGCCGCCTTATTTGACCAGATATCGCGCTATTTCTTG
TCGCGCGCCAAGGTGGTGTCCAAGGTGGCCAAGTATCCGCACATCGATGA
TTATCGGCGCGCAGTCGTCGAACTTGACGAGAAGGAGTACCTCAGCTTGT
GGCTGGTCGTTTGTGAGGTCCGCAATCGCTACTCCTCGCTGCACGACATT
GTTATTAAGAATCTCGAGAAGCTAAAGAAGCCGCGCTCCTCAAATACCGA
AAGCCTGTATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGGCCCAG
GTAGGTGGTCATAATCATAAT

FMO01111.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
REG-RB 1830 CG1591-RB 204..942 21..760 3555 98.8 Plus
REG-RA 1370 CG1591-RA 177..915 21..760 3555 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13213156..13213520 396..760 1795 99.5 Plus
X 23542271 X 13212585..13212938 21..374 1755 99.7 Plus
Blast to na_te.dros performed on 2014-11-28 22:24:22 has no hits.

FMO01111.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:36 Download gff for FMO01111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1591-RA 182..926 21..767 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:36 Download gff for FMO01111.5prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 21..767 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:11 Download gff for FMO01111.5prime
Subject Subject Range Query Range Percent Splice Strand
REG-RA 177..921 21..767 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:11 Download gff for FMO01111.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13212585..13212958 21..395 98 -> Plus
X 13213156..13213528 396..765 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:36 Download gff for FMO01111.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13106618..13106991 21..395 98 -> Plus
arm_X 13107189..13107561 396..765 98 -> Plus