FMO01112.5prime Sequence
1010 bp (589 high quality bases) assembled on 2008-03-04
> FMO01112.5prime
TTTAATAGGAAGTTATCAGTCGAATGGCCACCTCATCGATACTCGCGGAA
GGCACAATTAATAGCACATCGCCACCGGCCACGCCCAGCAGCAGCGCGTC
CCCCGGCTCCACACTGACCACCCGGAAGCGGACCTACGAGATAGCCATTG
CCATGCCCTCGTCCACCGCCTCCAGCAGCGCCACAAAGGTATCGGAAGTT
CAGGATCAGCGCACAAACAGCCCCGGCAAGTCCAAGAGCAGGCCCGGCCA
GCTGGAGAGTGTCTTGGTGGTCGGCGAGGGAGCCAGCGAGCCCACCACCT
CGGCCACCACACTGCGGGACAGCACACGCACCATCTCACAAAGCGACGCC
GACGATGGCGGCGAAGCGGCAGCCTTCGAGGACCTGCTGCCCCCACAGTC
GGATTACCTCAACGGCGTCAAGCGGAAGTACGTCCCGCATTAGCAGGCGT
CGCCGAATCACCGGGTGGTGCCCGCATCCACCTCGCAGCAATTCTTCAGC
GGGGCCTCCGATTTTGCGACAATTTGCAAGCCGGCGCTCTACTCTCACGA
CGAGGAGGCCATGCTGGAGCGGGATAGATGTGACTACACTCAAAGGATCA
CCTACCAGATGGCCCGCTCCGGGACAGACGACCCGCAGGGTGAGGGTCTA
CGCCGATGGCATCTACGATCTTTTCCACCAGGGCCACGCCCGCCAACTAA
TGCAGGCCAAGAACATCTTTCCCAACGTGTACTTAATTGTGGGGCGTGTG
CAACGACGAGCTCACCCACCGCATGAAGGGACGCACCGTGATGAACGGCT
TCAAGCGATACGAGGGAAGTGCGTTCCTGCCGCTATGTGGGACCAAAATC
GCTCAGAATGCGCCATGGACTCCTGTCCGATGAATTCCTTCGCCGACAAC
AAAATTCGACTTTGGTGGCCCACGACGACATTCCGTATGTAACCCGATGG
CAGGACGAACATCTATGCTCTCTTAAGCGCGCGGCAAGTTTGTGGGCCAC
GAAACGCACT
FMO01112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct1-RF | 2754 | CG1049-RF | 296..1273 | 24..1010 | 4275 | 96.5 | Plus |
| Cct1-RE | 2564 | CG1049-RE | 374..1351 | 24..1010 | 4275 | 96.5 | Plus |
| Cct1-RC | 2302 | CG1049-RC | 112..1089 | 24..1010 | 4275 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1550794..1551288 | 24..518 | 2370 | 98.6 | Plus |
| 3L | 28110227 | 3L | 1551477..1551796 | 518..840 | 1405 | 97.8 | Plus |
| 3L | 28110227 | 3L | 1554081..1554372 | 522..815 | 560 | 81 | Plus |
| 3L | 28110227 | 3L | 1551871..1552009 | 854..995 | 250 | 89.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:29 has no hits.
FMO01112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:44 Download gff for
FMO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1049-RB | 208..1194 | 13..1010 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:17 Download gff for
FMO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct1-RB | 208..1194 | 13..1010 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:04 Download gff for
FMO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct1-RC | 103..1089 | 13..1010 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:04 Download gff for
FMO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1550785..1551288 | 13..518 | 97 | -> | Plus |
| 3L | 1551478..1551801 | 519..847 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:17 Download gff for
FMO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1550785..1551288 | 13..518 | 97 | -> | Plus |
| arm_3L | 1551478..1551801 | 519..847 | 96 | -> | Plus |
