FMO01114.5prime Sequence
594 bp (594 high quality bases) assembled on 2008-03-04
> FMO01114.5prime
CAGTCGACATGTCGGTGGAATCCTCCAGTTCGGCGGTCCAACAGCCGCCG
TCGTCCTCGAACCTACCGCTCCTGGGCGACAACCAGGCGGTGGCCACGAC
CAGCTCCGCCTCCTCGGCCTCTTCCTCTTCCACATCGTCGTCCTCCTCGT
CGGTGGGCGGCGGCAATGTGGTGGGCGTGCCGCTGGACACGCAGGGCAGC
GGAGAACCGCCGGCCAAGAAACAGTTGTTGGACGGAGGGGGCGGTGGTGC
CACCAGCAGCAGCGGCAGCAGCTTGCTTTCCAGTGCCGCAGCCGCCTCGG
GAATGCACGAAAAGCTGGCCCACCGCATCTCCAATGCCCTGTGCTGTGCC
GTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGTGCCAGATGGGCCA
TCTGATGTGCGCCGCCTGTTTCACGCATCTGCTGGCGGATGGACGCTTGC
GCGATCAGATTGCCACGTGCCCCAATTGCCGCGTGGAAATTTCTAAGAGC
ACTGCGTCGCGCAACTTGGCCGTGGAGAACGCCGCCTCAGAATTGCCCAG
CGAGTGTCATTTCTGCAACAAGGAGTTCCCCATACAAATCTCTC
FMO01114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32486-RD | 2356 | CG32486-RD | 300..885 | 8..594 | 2880 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3070162..3070540 | 386..8 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 3057830..3057944 | 559..445 | 560 | 99.1 | Minus |
| 3L | 28110227 | 3L | 3058066..3058127 | 445..384 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:27:41 has no hits.
FMO01114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:24:13 Download gff for
FMO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..885 | 1..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:30 Download gff for
FMO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..885 | 1..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:27 Download gff for
FMO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..885 | 1..594 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:27 Download gff for
FMO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3057732..3057764 | 561..594 | 97 | <- | Minus |
| 3L | 3057829..3057943 | 446..560 | 98 | <- | Minus |
| 3L | 3058066..3058124 | 387..445 | 100 | <- | Minus |
| 3L | 3070162..3070544 | 1..386 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:30 Download gff for
FMO01114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3057732..3057764 | 561..594 | 97 | <- | Minus |
| arm_3L | 3057829..3057943 | 446..560 | 98 | <- | Minus |
| arm_3L | 3058066..3058124 | 387..445 | 100 | <- | Minus |
| arm_3L | 3070162..3070544 | 1..386 | 98 | | Minus |
