FMO01116.5prime Sequence
1209 bp (917 high quality bases) assembled on 2008-03-04
> FMO01116.5prime
CAGTCGACATGAGCCTGCAGTCGATCAAGTACTCGCGGGGCAGCCTGGAG
ATCCTCGACCAGCTGCTCCTGCCCGGTCAGTCAAAGTACGTGGTGGTGCG
AGGAGTGGAGGATGGCTGGAAGGTCATCAACAAGATGCAGGTGCGTGGTG
CTCCGGCCATCGCTATCGTTGGCTGCCTCTCCCTGGCCGTGGAAATCAAC
CCGGAGGATTTTGAGAACAAGAAATCACTGCGGCAGGAGATTGAGGGAAA
GTTGAACTATTTGGTTTCCGCCAGGCCTACGGCGGTCAACATGAAGATCG
CAGCCGACGAGCTCATCACCCTGGCCAACGAACTTTACAAGGACGAGGCA
ATCGACGTGTCCCAGATGAAGCATAGATTTCTGGACGCGACCGAAGCTAT
GCTAAAAAAAGACATTGCCGATAATCGTGCCATTGGAGCGAATGGAGCCC
AGGCGATCCTACAGGGCGTGGCGAAGGCAGGTAAAGCGCCCGCTGGATCG
ACGGGATCCGTCCGGGTGCTTACCCACTGCAACACGGGTTCCCTGGCCAC
CGCCGGGTACGGTACAGCTCTGGGAGTGGTCCGCCAACTGGCCGAGCTGG
GAAAACTGGAGCACGTTTATTGCACAGAGACTCGTCCTTACAATCAGGGA
GCCCGCCTCACAGCCTACGAACTGGTCCACGAGAAATTCCCCGCCACTCT
GGTTCTGGATAGCATGGTGGCGGCTCTGCTGCGGGCCAAAAATGTGGCTG
CTGTGGTTGTAGGAGCAGATCGTGTGGCCTCCAATGGCGACACGGCCAAC
AAGATTGGTACCTACCAGATTGCCGTGTTGCCAAGCACCACGACGTGCCA
TTTTACGTAGCCGCCTCTCTGACTTCCATCGATCTAGCGATTCCCGGAGG
CGATCACATCATCATTGAGGAGCGTCCCGACGGGAAATGACGCACGTGGG
GAGAGCACCGCATCGCTGCCCGGGCATTACTGCTGGACCCGGCTTTCGAT
GTGACCCTGCTCTTCTGATCACAGGCTCATCCGGAACGCCGGTGTCTTCA
GCCGGCGGAACTGAAAGAGCCATCACTAGTGGCTAAGAGTCGGCAGGCTT
TCAAGAACATTGTTGGCGCGGCCAGGTATTGTCTAACCTATTATCTAATC
CAATCCAACTAGCTAGGAGGATCTGCCATGACAGGCCGTGAATTCTCCCC
CATAAAATG
FMO01116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11334-RC | 1380 | CG11334-RC | 96..1186 | 9..1091 | 4970 | 97.9 | Plus |
| CG11334-RB | 1452 | CG11334-RB | 168..1258 | 9..1091 | 4970 | 97.9 | Plus |
| CG11334-RA | 1516 | CG11334-RA | 232..1322 | 9..1091 | 4970 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31460630..31460864 | 609..375 | 1160 | 99.6 | Minus |
| 3R | 32079331 | 3R | 31460921..31461158 | 376..139 | 1160 | 99.2 | Minus |
| 3R | 32079331 | 3R | 31460039..31460341 | 1069..774 | 890 | 93.1 | Minus |
| 3R | 32079331 | 3R | 31460398..31460564 | 775..609 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 31461811..31461945 | 143..9 | 675 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3833..3877 | 324..280 | 117 | 73.3 | Minus |
FMO01116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:47 Download gff for
FMO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RB | 138..1236 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:02 Download gff for
FMO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RA | 224..1322 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:52 Download gff for
FMO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RA | 224..1322 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:52 Download gff for
FMO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31460630..31460862 | 377..609 | 99 | <- | Minus |
| 3R | 31460016..31460341 | 774..1091 | 93 | <- | Minus |
| 3R | 31460400..31460563 | 610..773 | 100 | <- | Minus |
| 3R | 31460921..31461156 | 141..376 | 99 | <- | Minus |
| 3R | 31461814..31461953 | 1..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:02 Download gff for
FMO01116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27285738..27286063 | 774..1091 | 93 | <- | Minus |
| arm_3R | 27286122..27286285 | 610..773 | 100 | <- | Minus |
| arm_3R | 27286352..27286584 | 377..609 | 99 | <- | Minus |
| arm_3R | 27286643..27286878 | 141..376 | 99 | <- | Minus |
| arm_3R | 27287536..27287675 | 1..140 | 97 | | Minus |
