FMO01117.5prime Sequence
970 bp (970 high quality bases) assembled on 2008-03-04
> FMO01117.5prime
CAGTCGACATGAGCAGTCGCAAGCACAGAGGCTCCGAAAACATGGAAAAT
TTGTGCCCGGTGACCAGAAAGCGCTCGACTAATAAGAACCACGTCTCTGT
TGTGGGCGCTCTAGTTTCCACTACGAAGTCATCGCACTACGAGCACCCTT
CCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGGGAATCGGA
ATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCCATCGCTTT
GGCGGTTAGCGCCACCAGCGACGACAACTCAAATGAGACGACCCCGTGCG
CCAGTGTGTCGCGCATGGCGCACCAGCTACAGCACACGCAACGGCTAAGT
CTGGGCTCTACGGGGGACATCACACTGGATAGCCCAGCTGTGGAGGATTC
ACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCTGGCGCAGG
CTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAAACTCGCCC
AGCAAACGTTTGCGCAACCGCCTGGCTGCAGTCACCTGTAACAACCAGAT
TGATGGGACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAGGTTGGCGC
AAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAATATTACAACCCGAATA
GTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATGAGTGCCCA
CATCAACAGCGGCATAAACTACTTTGAAAGACTTTCAGACGAAATACTAC
TTGACATCTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCATGGCTACC
GTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGAGACTTTGTGGACAAG
GCTAGATTTGGGTTTGCGGACAATTAGACCAGGTGCCCTCGAGCAAATTG
TACGGCGGGGAGTCCTTGTAATACGTCTGGCTCAGACTAGTGTAAGTTAC
ATCGCAGCTTTCTAGACCAT
FMO01117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 69..1001 | 9..941 | 4635 | 99.8 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 69..1001 | 9..941 | 4635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336457..4337345 | 953..65 | 4415 | 99.8 | Minus |
| 3R | 32079331 | 3R | 4337548..4337606 | 67..9 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:24 has no hits.
FMO01117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:49 Download gff for
FMO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RC | 75..1032 | 3..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:08 Download gff for
FMO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 75..1013 | 3..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:47 Download gff for
FMO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 63..1001 | 3..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:47 Download gff for
FMO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336450..4337342 | 68..961 | 99 | <- | Minus |
| 3R | 4337548..4337612 | 3..67 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:08 Download gff for
FMO01117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 162172..163064 | 68..961 | 99 | <- | Minus |
| arm_3R | 163270..163334 | 3..67 | 95 | | Minus |
