Clone FMO01120 Report

Search the DGRC for FMO01120

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:20
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7288-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01120.5prime Sequence

887 bp (792 high quality bases) assembled on 2008-03-04

> FMO01120.5prime
CAGTCGACATGGCGCAAACGCAAGCTCCAGCCGCCAAGCGCATGAAGCTG
GAGAAGACGCCGGCAAATCCCGTCGAAGAGGATGAGACGCCCTCCGTGTT
CAATTCGAAGTACAGGGTGTGTCCCTACTTGGACACCATCAACCGTAACC
TGCTGGATTTCGATTTCGAGAAGCTTTGCTCCATTTCGCTGACGAGGATC
AATGTTTATGCCTGCCTGGTGTGCGGCAAGTACTTCCAGGGACGTGGCAC
CAACACCCACGCCTACACACATTCCGTGGGCGAGGCTCATCACGTGTTCC
TCAATCTGCACACGCTGCGATTCTACTGCCTGCCGGATAATTACGAGATC
ATCGACTCCTCGTTGGACGATATCAAATACGTGCTAAATCCAACGTTCCC
ACGCCAGGAGATCAGCAAGTTGGATGAGGGGGCGGCCGAAGCATTCGCGA
ACCGTGGACGGTGTTCTGTACTTACCCGGCGTCGTGGGTTTGAACAACAT
CAAAGCGAACGACTACTGCAATGTGGTGCTGCATGCACTCTCCCACGTCG
GTCCACTTAGGGACTACTTCCTGCAAAAGCAAAGCTATGCGCATGTCGTG
CGGCCACCTGGAGATTCCGTGTTCACGCTGGTGCAACGTTTCGGCGAGCT
AATGCGCAAGATGTGGAATCCGCGGAACTTTAAGTCGCACGTTTCGCCAC
ACGAGATGCTGCAAGCTGTGGTGCTTTGGTCCAGCAAGCGTTTCCAGATC
ACCGAGCAGGGCGATCCCATTGACTTTCTGCCCTGATCCTCAATACACCT
GCACCGCGCCTCTCTGGGCAACAACATCCGAATTCTTTCTATACTCTACA
GGTTATTTCTGGCGAAATGAAGATCTACTCGCGCCAG

FMO01120.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7288-RA 1695 CG7288-RA 93..968 9..884 3975 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18858488..18859288 84..884 3435 96.9 Plus
X 23542271 X 18858377..18858432 29..84 280 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:41:24 has no hits.

FMO01120.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:51 Download gff for FMO01120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 80..958 9..887 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:49 Download gff for FMO01120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 93..971 9..887 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:05 Download gff for FMO01120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 93..971 9..887 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:05 Download gff for FMO01120.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18858295..18858316 9..30 100 -> Plus
X 18858379..18858432 31..84 100 -> Plus
X 18858489..18859291 85..887 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:49 Download gff for FMO01120.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18752328..18752349 9..30 100 -> Plus
arm_X 18752412..18752465 31..84 100 -> Plus
arm_X 18752522..18753324 85..887 97   Plus