FMO01124.5prime Sequence
908 bp (875 high quality bases) assembled on 2008-03-04
> FMO01124.5prime
CAGTCGACATGTGTGTGAATCGAGAAACCCAGAGCAGCAGCAACAATAAT
AGCAACAACACTACAACGGCAACGTCAACAGCACGCAACAACAACAGCCA
CAACGGACGCTGTGAGTGCGACGGAGACGGCGACAGCGTGAGTCATATAC
AAAGTGAAATGAAAATGCGGATAAAGCGAGAAGCGCCGTGTCTTCTGTTA
TTTATGCCAATCCAAAATACCAACAACAACAATCGCATTGGTGCCAATCA
GAAGGACTATCCCAACAAGCGGTCCAGGGAGAATCTGGCATGTGACGAAG
TGACATCGACGACGTCATCATCCACGGCAATGAACGGCGGCGGACGGACG
CCGGCGCTTATCTGGAGCTGCTCCAGTCCGGCGGTCTACGATATAGAAAC
ACACCCCGCCTCGCCCGTTTTCCCGCATCTATTGCTGGGCAATGGACGCG
ACGCCGACGATCCCAGCAGCGTGGGCGCCAACTGTGTGCTGAACGTTACC
TGCCAAAGTCCCAATGAGAGCCATCTGCAGGGCCTCAAGTACATGCAAAT
ACCTGCCAGCGATACGCCACATCAGAACATCAAGCAGTACTTCCAGGAGG
CCTACGACTTTATCGAAGATGCACGGAAAACGGGTTCCCGAGTGCTGCTG
CACTGCCACGCGGGGATTTCGCGGAGCGCCACCATTGCCATCGCCTACGT
CATGCGGTACAAAGTCGCTCTCTCTGCTGGAGGCCTACAAGCTGGTGAAA
GTGGCCCGGCCGATCATCTCGCCCAATCTGAACTTCATGGGCCAGCTGCT
GGAGCTGGAGCAAATTTGCGCAAAAGCGGAGTCCTGGCGCCCGCAACCCC
GCACTGAATAGTCCTAGCAATCCTTCGTCATTCTTCTGTGGGATTAAGCA
CTCCAATC
FMO01124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| puc-RA | 2919 | CG7850-RA | 530..1428 | 9..908 | 4265 | 98.6 | Plus |
| puc-RB | 2407 | CG7850-RB | 252..916 | 243..908 | 3110 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8120511..8120797 | 615..901 | 1215 | 97.9 | Plus |
| 3R | 32079331 | 3R | 8105861..8106095 | 9..243 | 1160 | 99.6 | Plus |
| 3R | 32079331 | 3R | 8111076..8111301 | 390..615 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 8108231..8108378 | 243..390 | 665 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:37 has no hits.
FMO01124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:12 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:38 Download gff for
FMO01124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 523..1428 | 1..908 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:45 Download gff for
FMO01124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 523..1428 | 1..908 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:45 Download gff for
FMO01124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8105854..8106095 | 1..243 | 97 | -> | Plus |
| 3R | 8108232..8108378 | 244..390 | 96 | -> | Plus |
| 3R | 8111077..8111301 | 391..615 | 100 | -> | Plus |
| 3R | 8120512..8120803 | 616..908 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:38 Download gff for
FMO01124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3933954..3934100 | 244..390 | 96 | -> | Plus |
| arm_3R | 3931576..3931817 | 1..243 | 97 | -> | Plus |
| arm_3R | 3936799..3937023 | 391..615 | 100 | -> | Plus |
| arm_3R | 3946234..3946525 | 616..908 | 97 | | Plus |
