Clone FMO01125 Report

Search the DGRC for FMO01125

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:25
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCtBP-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01125.5prime Sequence

872 bp (725 high quality bases) assembled on 2008-03-04

> FMO01125.5prime
CAGTCGACATGGACAAAAATCTGATGATGCCGAAGCGTTCGCGCATCGAT
GTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCACTGGTGGC
CCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCTAAAGGATG
TGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAATACACGAG
AAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACCATCATCTT
GACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTATCGTGCGCA
TCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCGAACTGGGC
ATCGCCGTGTGCGACGTTCCCGGCTACGGAGTCGAGGATGTGCCCCCCCC
CCACGATGTGCCTCATCCTCAACCTCTAGGGGGGGACATACTGGCTAGCG
AACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAACAAGTGCGGGA
GGCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGTCTGGTGG
GACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGCGTTCGGC
TTCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCGACAGTCG
CTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTCCAGTCCGA
TTGCGTCTCACTGCATTGCACGCTCACGACCACAACCATCATTTAATCGA
TGAATTCACAATTAAACAGACGCGACCTGGTGCTTTCTGGAGAAACCGCC
ACGCGGAGGTCTGGTCCATGCCAAACCTGGGGTGGCGCTAAACAGAAGGA
TAAAGCTCCCCCCCGAAGCGAC

FMO01125.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RJ 2612 CG7583-RJ 375..1192 5..820 3665 97 Plus
CtBP-RI 2382 CG7583-RI 375..1192 5..820 3665 97 Plus
CtBP-RH 2627 CG7583-RH 375..1192 5..820 3665 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13019894..13020202 202..511 1320 95.8 Plus
3R 32079331 3R 13020849..13021114 506..769 1185 98.1 Plus
3R 32079331 3R 13019616..13019816 5..205 990 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 20:17:45 has no hits.

FMO01125.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:50 Download gff for FMO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7583-RD 359..1179 1..820 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:39 Download gff for FMO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RH 372..1192 1..820 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:06 Download gff for FMO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RH 372..1192 1..820 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:06 Download gff for FMO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13019613..13019814 1..203 99 -> Plus
3R 13019896..13020201 204..510 95 -> Plus
3R 13020854..13021114 511..769 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:39 Download gff for FMO01125.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8845335..8845536 1..203 99 -> Plus
arm_3R 8845618..8845923 204..510 95 -> Plus
arm_3R 8846576..8846836 511..769 98 -> Plus