FMO01126.5prime Sequence
1180 bp (833 high quality bases) assembled on 2008-03-04
> FMO01126.5prime
CAGTCGACATGAGTCTACAGGACGAGAGTTTTCCGACGGACGAGCTGTTT
GACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACCTGGTTCGC
GGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCCATTTTTGG
AGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATGTGGCCAAC
AAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGATCAGGAGGA
TGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAAACTGGGTT
GCGAGAAGGCTCCATTGGGCAGCGGGCGCTCTAGCAAGGCGGTCTCTTAC
CAGGACATCTATTCGGCCTACACGAAGCGCCGCTTCCAGCACGTGACCAG
CAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCAAAAGAGAC
GCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGCCGGAGAGT
CTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGACTTCAAGGT
GGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTACAATTCCA
ATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCGAGAACGAG
AGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAGTGAAGCGTCTGCA
GGGCTTCAACGAGTATGTCCAGGAATGACTGGACAGAAAGATAGATGATT
TTGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGAGCTAAGCGAA
TGCCAGCAGAAGCTTAGCGCTAGCAGGACAACTCACAGCATCACTTCATG
TACACATTCGATCGGCGACCAGTGCCAAGGCACTCAAACGGATTTCCTGG
TGACACCATACCCGCCTCCGGAAACGTCCTGATCACACCTCATCCTCTGG
CGACCTGACCTACACAGCAGCAAAGATCATCGAGTGGCACTGCTCAGTGT
GCGCTTCTGCCCGAGTGACCAAATTCCGTTCAGGTCACGCGCGATTCATC
CCAATTCTTGACTTAACACGTAGACTCGAAGCTGATGCACGTAGTGGCAA
CTCTGTGACTTATCAGCTTGGACAAGATTGGCTAACTCGGATCTCTGCTG
AACTAATATCGCTCTGAGTTGGAGGCTCTG
FMO01126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swa-RA | 2022 | CG3429-RA | 113..1170 | 9..1051 | 4730 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6364443..6365145 | 975..279 | 3065 | 97.7 | Minus |
| X | 23542271 | X | 6365325..6365596 | 280..9 | 1360 | 100 | Minus |
| X | 23542271 | X | 6362211..6362662 | 945..489 | 1230 | 86.5 | Minus |
| X | 23542271 | X | 6362667..6362833 | 448..282 | 625 | 91.6 | Minus |
| X | 23542271 | X | 6363110..6363242 | 280..142 | 525 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:34 has no hits.
FMO01126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:56 Download gff for
FMO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3429-RA | 109..1186 | 1..1064 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:56 Download gff for
FMO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 108..1185 | 1..1064 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:12 Download gff for
FMO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 108..1185 | 1..1064 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:12 Download gff for
FMO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6364343..6365144 | 280..1064 | 96 | <- | Minus |
| X | 6365326..6365600 | 1..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:56 Download gff for
FMO01126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6258376..6259177 | 280..1064 | 96 | <- | Minus |
| arm_X | 6259359..6259633 | 1..279 | 98 | | Minus |
