FMO01127.5prime Sequence
872 bp (872 high quality bases) assembled on 2008-03-04
> FMO01127.5prime
CAGTCGACATGGACTTACAGCATATGGAGAATGGTCTAAGCGGCGGGGGA
GGAGGTGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAGATTATAGC
CACCAGCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCAGCGCATGG
TCAATCAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGAAGCAGCTC
CACCAAATAATGACCTACACCAACCAGCTGGTGACCGACACAAACAATCA
AATCAACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGATCCAGCGGG
ATAGGCTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCCAGTCTGTT
CAGCGCAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAGGCGCGCGG
AGATAGCTACAACATCGCCCGTCCATCCGGCTCATCGCGTACCGGCAGCT
CCAACAGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCGAGGACAAC
TTCTTCAATCGCAAATCAAACCAGCAACAGATGCAGACTCAGATGGAGGA
GCAGGCGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCATACGGGAGT
TGGAGAACAACATCGTGGGCGTGAACGAGATATACAAGAAGCTTGGCGCT
CTGGTCTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCGCAGGTGGA
ACAGACTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCGCAAGGCGA
GCTCTTACAGGAACAAAGTGCGCAAGAAGAAGCTTATTTTGGTGGGCATC
CTGAGCGCCGTGCTGCTGGGCCATCATCTTGATACTCGTTTTTCAGTTCA
GGATGCAAGCTTTCTAGACCAT
FMO01127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx7-RB | 1610 | CG5081-RB | 284..1125 | 8..850 | 4160 | 99.6 | Plus |
| Syx7-RA | 1573 | CG5081-RA | 247..1088 | 8..850 | 4160 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21447079..21447497 | 343..761 | 2065 | 99.5 | Plus |
| 3L | 28110227 | 3L | 21446863..21447007 | 200..344 | 725 | 100 | Plus |
| 3L | 28110227 | 3L | 21446254..21446375 | 8..129 | 610 | 100 | Plus |
| 3L | 28110227 | 3L | 21447555..21447643 | 761..850 | 400 | 98.9 | Plus |
| 3L | 28110227 | 3L | 21446442..21446512 | 129..199 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:29 has no hits.
FMO01127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:58 Download gff for
FMO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5081-RB | 296..1141 | 8..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:33 Download gff for
FMO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 247..1092 | 8..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:25 Download gff for
FMO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 247..1092 | 8..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:25 Download gff for
FMO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21446254..21446375 | 8..129 | 100 | -> | Plus |
| 3L | 21446443..21446512 | 130..199 | 100 | -> | Plus |
| 3L | 21446863..21447007 | 200..344 | 100 | -> | Plus |
| 3L | 21447081..21447497 | 345..761 | 99 | -> | Plus |
| 3L | 21447556..21447647 | 762..858 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:33 Download gff for
FMO01127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21439354..21439475 | 8..129 | 100 | -> | Plus |
| arm_3L | 21439543..21439612 | 130..199 | 100 | -> | Plus |
| arm_3L | 21439963..21440107 | 200..344 | 100 | -> | Plus |
| arm_3L | 21440181..21440597 | 345..761 | 99 | -> | Plus |
| arm_3L | 21440656..21440747 | 762..858 | 94 | | Plus |
