FMO01129.5prime Sequence
1224 bp (996 high quality bases) assembled on 2008-03-04
> FMO01129.5prime
CAGTCGACATGAGCGTTTCGATGTCACTGGTACAGGGTGGTGCTGCCGGT
GGTGCGCCACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCTCCCTACTA
TCAACCGCCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCCTATCGGCT
ATGGAGCATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCGATGGACGA
CGAGTGGCATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTGGTCTCATC
GAAGCGCGTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAAGCATGAAA
ATGTTCTTTCAGCTCTGGACATTCTACAGCCACCGCATTTGGATTTCTTT
CAAGAAATCTATGTGATAACGGAGCTGCTGCAATCGGATCTGCACAAGAT
AATCGTGTCGCCACAGCACTTGTCCGCCGACCACATCAAGGTGTTCCTGT
ACCAGATCCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCATCCTGCAT
CGCGACATCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGCGTGCTCAA
GATCTGTGACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCAGGCCAAGC
ACATGACCCAAGAGGTGGTCACCCAGTACTATCGCGCACCGGAGATTCTG
ATGGGCGCTCGCCACTACTCGTCGGCGGTGGATGTATGGTCGGTGGGCTG
CATTTTTGGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGCACAGAATC
CTGTGCAGCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGCCCACCATG
GAGGATATGCGTCACGCCTGCGAGGGCGCCCGCACCACATGTTGCGCGGG
CGCCCAAGCCGCATCCTTCTCGGTGCTCTACACACTCAGCTCGCATGCCA
CGCACGAGGCGGTGCACTTGCTCTGCAGATGCTCGTCTTCGATCGGATAG
CGCATCTCCGTGACAGATGCCCTGCGCATCGTATCTGGATGAGGGGCGTC
TGCCCTATCACTCGTGCATGGTGCAAATGCTGCCTCACTACCTCAGCCGG
ATGGCTCAGTATACGCTGAATTTGAACTTCGCGTATCTTCATGATCTGGG
AACGTAGCTGAACTTCGTGACCAGTCAAAAAGAAAATGCCAAGTCATGGC
GAACTGCACGGTCGGTACCGTTGTTATATCTCAAGAGTGACCTCTAGAAT
TCTCACGACACACAGGACTTTCTG
FMO01129.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmo-RH | 6235 | CG7892-RH | 719..1794 | 9..1075 | 5020 | 98.4 | Plus |
| nmo-RG | 2250 | CG7892-RG | 548..1623 | 9..1075 | 5020 | 98.4 | Plus |
| nmo-RF | 2757 | CG7892-RF | 1055..2130 | 9..1075 | 5020 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8046570..8047159 | 359..944 | 2735 | 99.2 | Plus |
| 3L | 28110227 | 3L | 7980819..7980983 | 9..173 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 8039874..8040006 | 172..304 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8047250..8047353 | 949..1051 | 345 | 95.2 | Plus |
| 3L | 28110227 | 3L | 8045891..8045950 | 303..362 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:23 has no hits.
FMO01129.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:17 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:12 Download gff for
FMO01129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..2130 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:01 Download gff for
FMO01129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..2130 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:01 Download gff for
FMO01129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8047246..8047353 | 946..1051 | 94 | == | Plus |
| 3L | 7980814..7980982 | 1..172 | 98 | -> | Plus |
| 3L | 8039875..8040004 | 173..302 | 100 | -> | Plus |
| 3L | 8045891..8045946 | 303..358 | 100 | -> | Plus |
| 3L | 8046570..8047161 | 359..945 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:12 Download gff for
FMO01129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7973914..7974082 | 1..172 | 98 | -> | Plus |
| arm_3L | 8032975..8033104 | 173..302 | 100 | -> | Plus |
| arm_3L | 8038991..8039046 | 303..358 | 100 | -> | Plus |
| arm_3L | 8039670..8040261 | 359..945 | 98 | -> | Plus |
| arm_3L | 8040346..8040453 | 946..1051 | 94 | == | Plus |
