FMO01135.5prime Sequence
1148 bp (368 high quality bases) assembled on 2008-03-04
> FMO01135.5prime
ATAAAACGAAGTTATCAGTCCACATGAAGGTCTGCTGCATTGGCGCTGGT
TATGTCGGCGGTCCGACCTGCGCGGTTATGGCGCTCAAATGCCCCGATAT
CGTGATAACTCTGGTGGACAAGAGCTCCGAGCGGATTGCCCAGTGGAATT
CGGATAAGTTGCCCATTTACGAGCCCGGCTTGGATGAGGTGGTGAAGAAG
TGCCGCAATGTGAACCTCTTCTTCTCAACGGACATCGAGACGGCCATCAA
GGAGGCGGACCTCATCTTCATCTCGGTGAACACGCCCACAAAAACCTGCG
GCAATGGCAAGGGCCGAGCGGCGGACCTCAAGTACGTGGAGAGCGCAGCG
CGGATGATCGCCGAGATCGCGTAGTTCGACAAGATTGTGGTGGAGAAGAG
CACGGTGCCCGTGCGGGCGGCGGAGAGCATCATGCACATACTGCGAGCGA
ACCAGAAGCCGGGCATCCACTACGACATACTGTCCAATCCCGAGTTCCTC
GCCGAGGGCACCGCCATCAATGACCTGCTAAATGCGGATCGTGTGCTGAT
CGGCGGCGAGGAGACGCCCGAGGGCCACCAGGCGGTGGAGAAGCTGTCGT
GGATCTACGAGCACTGGATACCCAAGCAGAACATACTCACGACGAACACG
TGGAGCAGCGAGCTGTCTAAGCTGGCGGCCAACGCATTCCTCGCCCAGCG
AATCTCCAGCATCAATTCGCTGTCGGCAGTGTGCGAGGCCACGGGCGCAG
ATGTTTTCGAGGTGGCGAGGGCCGTGGGTCTAGACTCTCGCATCGGTTCC
AAGTTCCTGCAGGCGTCGTGGGCTTCGACGGCAGTTGCTTTCAGAAGGAC
ATCTCATCTGATTTACATCTGCGAGACCTCATTCTGCCGAGTGACGCCTA
CTGCAGCAGTGATCGACATGATGATACAGAGCGTCGATCTCGCTAACATC
ATCGAGAGTCTGTCACTCGTGTCGAACAGCGATAGCGATCTGGGTCTTGC
TTCAGAAGATACGGCGAATCCTCTAACAGCTGCATTACCGTGGCAGTCTG
CTGAGAGCCCGCTGATTCACGATCGAAGGTGACCGACAATCTCATGACTC
GATCAGTTCGAATCTGAAAGTCAAATGGCGGTCAATCCCGGATACCCT
FMO01135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgl-RA | 2275 | CG10072-RA | 213..1227 | 24..1014 | 4280 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6960761..6961328 | 876..312 | 2620 | 98.2 | Minus |
| 3L | 28110227 | 3L | 6964397..6964546 | 173..24 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 6961810..6961951 | 313..172 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:19 has no hits.
FMO01135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:16 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:19 Download gff for
FMO01135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1181 | 16..974 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:56 Download gff for
FMO01135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1181 | 16..974 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:56 Download gff for
FMO01135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6960648..6961327 | 313..974 | 95 | <- | Minus |
| 3L | 6961811..6961949 | 174..312 | 100 | <- | Minus |
| 3L | 6964397..6964555 | 15..173 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:19 Download gff for
FMO01135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6957497..6957655 | 15..173 | 96 | <- | Minus |
| arm_3L | 6953748..6954427 | 313..974 | 95 | <- | Minus |
| arm_3L | 6954911..6955049 | 174..312 | 100 | <- | Minus |
