FMO01136.5prime Sequence
1151 bp (913 high quality bases) assembled on 2008-03-04
> FMO01136.5prime
CAGTCGACATGTCTCCAAAAGCGCTAAATGTGCGCGTCACGACAATGGAC
GCGGAACTGGAGTTCGCCATTCAGTCGACGACGACGGGCAAGCAATTGTT
TGACCAGGTGGTGAAGACGATCGGCCTGCGAGAGGTTTGGTTCTTTGGAC
TCCAGTACACCGACTCCAAGGGCGACTCCACATGGATCAAGCTGTACAAA
AAGGTGATGAACCAGGACGTGAAGAAGGAGAATCCCTTGCAGTTTAGGTT
CCGTGCCAAATTCTATCCCGAGGATGTGGCCGAGGAGCTGATCCAGGACA
TTACACTGCGTCTGTTCTACCTGCAGGTGAAGAATGCCATACTGACCGAC
GAGATCTATTGTCCGCCAGAGACATCCGTGCTGCTCGCCTCGTACGCCGT
CCAGGCGCGTCATGGTGACCACAATAAGACCACCCACACAGCCGGCTTTC
TGGCCAACGATCGCCTGCTGCCGCAGCGCGTCATCGACCAGCACAAGATG
TCCAAGGACGAGTGGGAGCAGTCGATTATGACCTGGTGGCAGGAGCATCG
CAGCATGCTGCGCGAGGATGCCATGATGGAGTATCTGAAGATCGCCCAAG
ACCTGGAGATGTACGGCGTTAACTACTTTGAGATCCGCAACAAGAAGGGC
ACGGATCTTTGGCTGGGCGTAGACGCACTGGGTCTGAACATTTACGAGCA
GGACGATAGGTTGACGCCGAAAATTGGTTTCCCATGGTCCGAGATTCGCA
ACATTTCGTTCTCGGAGAAGAGTTCATCATCAAGCCGATCGACAAGAAGG
CTCCGGACTTTATGTTCTTTGCGCCACGTGTCCGCATCAACAAGCGCATT
CTGGCCTCTGCATGGGCAACCACGAGCTGTACATGCGTCGCCGCCAAGCC
GGACACCATCGATGTGCAGCAGATGAACGGCGCAGGCGCGCGAGGAGAAG
ATGCCCAACAGCAGAACGTGAGAAGCTGGCACCTGGCGCTGGTCGCTCGC
GAACGCGCTGAAAAAAGCGCAGGTACAAGATTCGGTTACGCAATGCAGAG
AAATGGATGTTCGAGGCGACATGCTGGAGCCAGGACATGATCCCCGCTTG
GAAGAAACCGATCATGGAGGTTCATCAACTCGACCGTCCAAAGACTGTGC
G
FMO01136.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moe-RL | 2528 | CG10701-RL | 468..1485 | 9..1023 | 4820 | 98.7 | Plus |
| Moe-RD | 3003 | CG10701-RD | 341..1358 | 9..1023 | 4820 | 98.7 | Plus |
| Moe-RJ | 2401 | CG10701-RJ | 341..1358 | 9..1023 | 4820 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8875099..8875862 | 964..202 | 3565 | 99.2 | Minus |
| X | 23542271 | X | 8876571..8876753 | 205..23 | 915 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1605..1671 | 859..921 | 119 | 67.2 | Plus |
FMO01136.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:48 Download gff for
FMO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10701-RI | 220..1233 | 1..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:34 Download gff for
FMO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RJ | 334..1347 | 1..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:56 Download gff for
FMO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RJ | 334..1347 | 1..1014 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:56 Download gff for
FMO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8875094..8875860 | 204..968 | 99 | <- | Minus |
| X | 8876573..8876752 | 24..203 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:34 Download gff for
FMO01136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8769127..8769893 | 204..968 | 99 | <- | Minus |
| arm_X | 8770606..8770785 | 24..203 | 100 | <- | Minus |
