Clone FMO01138 Report

Search the DGRC for FMO01138

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:38
Vector:pMK33-CFH-BD
Associated Gene/Transcriptaph-1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01138.5prime Sequence

740 bp (740 high quality bases) assembled on 2008-03-04

> FMO01138.5prime
CAGTCGACATGACGTTGCCCGAGTTCTTTGGCTGCACCTTCATCGCCTTC
GGACCGCCCTTCGCCTTGTTCGTCTTCACCATCGCCAATGATCCAGTGCG
GATCATCATTCTGATTGCGGCGGCATTCTTCTGGCTGCTTTCCCTGCTGA
TCTCTTCCCTGTGGTATGCCCTGATTCCGCTGAAGGAGTTCCTGGCATTT
GGCGTGGTCTTCTCGGTGTGCTTCCAGGAAGCCTTCCGGTACATCATCTA
CCGGATACTGCGCAGCACGGAGCAGGGATTGCACGCCGTGGCGGAGGACA
CGCGAGTGACGGACAACAAGCACATCCTGGCCTATGTCTCCGGCTTGGGA
TTCGGCATTATATCCGGGATGTTTGCACTGGTCAATGTGCTGGCTGATAT
GAGTGGTCCCGGCACCATGGGCTTGAAGGGCGGAACTGAGCTATTCTTCG
TCACCTCGGCTGCCCAGGCGTTGTCGATTATCCTGCTGCACACCTTCTGG
AGCGTTATTTTCTTCAACGCATTCGACACAAACAACTATATCCACATAGG
CTATGTGGTTTTCAGCCACCTGTTCGTCTCCCTGATAACTCTGCTCAATG
CCAATGAGCTTTACACGACCACTCTGCTGATAAACTACTTGGTCACCATA
CTTACGGGAGTCCTGGCCTTCCGGGTGGCTGGAGGAACATCTCGCAGTTT
CAGAAAATTCATAACATGCCAGGCAAGCTTTCTAGACCAT

FMO01138.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
aph-1-RB 990 CG2855-RB 83..796 9..722 3570 100 Plus
aph-1-RA 863 CG2855-RA 83..796 9..722 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2766315..2766707 9..401 1965 100 Plus
2L 23513712 2L 2766766..2767087 401..722 1610 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:14:41 has no hits.

FMO01138.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:08 Download gff for FMO01138.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2855-RA 73..797 1..726 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:06 Download gff for FMO01138.5prime
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 75..799 1..726 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:55 Download gff for FMO01138.5prime
Subject Subject Range Query Range Percent Splice Strand
aph-1-RA 75..799 1..726 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:55 Download gff for FMO01138.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2766307..2766707 1..401 99 -> Plus
2L 2766767..2767090 402..726 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:06 Download gff for FMO01138.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2766307..2766707 1..401 99 -> Plus
arm_2L 2766767..2767090 402..726 99   Plus