Clone FMO01139 Report

Search the DGRC for FMO01139

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:39
Vector:pMK33-CFH-BD
Associated Gene/Transcriptrho-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01139.5prime Sequence

1226 bp (999 high quality bases) assembled on 2008-03-04

> FMO01139.5prime
CAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCAAGGTGGAT
TTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAGCATGCCAC
CGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTCCAGTTCCT
CCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCAGCACCTGC
TGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCCATCCCGGC
CACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTACGTCCACC
GCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTGAGATTGCC
ATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTCGGGCTACC
CGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGACCGGCGTC
TGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCAACTGGTTC
CACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATTCCCCTGGA
GGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGCGGGCGTTT
TTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCTTCCTGGTG
GGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTGGCCAACAT
TACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACTCGGATCCG
TTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACACCCAATAC
TTCGATGGAAGCGCCTTCGCCAAGGGTCCCAGGTGTCGTACATTGCCCAC
CTGACGGGAGCCCTGGCAGGACTACGATCGGCTTTCTGGTGCTAAAGACT
TCGGTCACCGAGAGTACGAGCAGCTCATCTGGTGGCTAGCGTTGGGCGTT
CTACTGTGCTTCACGTCTTCGCATCGTTTTCAACTGATCAACACGGTGAC
CGCTCAGCTGATGAGAGCAGGTGAGGTGATTTACCAGGCATCTGTGCCCG
ACCTGGGAGGTGTCCGCAGCTTCCTGGAACAATCGTTTGGCGCGCGGTCA
GGGAAGGGCCTAAATCTAAACTAATCTAATCATAATCACACTGAGCCTAG
AGAATCTGTCAGGAACGGCTGGATCCCAAAAAAAAGGCCGGCGTACACGA
CGAGTTGAACAATCAGAAGAGAAGTA

FMO01139.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RB 3000 CG1004-RB 341..1406 8..1065 4950 98.4 Plus
rho-RA 2531 CG1004-RA 341..1406 8..1065 4950 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1466488..1466907 343..762 2100 100 Plus
3L 28110227 3L 1465486..1465822 8..344 1685 100 Plus
3L 28110227 3L 1467039..1467296 762..1013 895 96.9 Plus
Blast to na_te.dros performed on 2014-11-28 22:23:39 has no hits.

FMO01139.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:51 Download gff for FMO01139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1004-RA 354..1429 1..1069 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:19 Download gff for FMO01139.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 335..1410 1..1069 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:54 Download gff for FMO01139.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-RA 335..1410 1..1069 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:54 Download gff for FMO01139.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1467040..1467311 763..1025 95 -> Plus
3L 1465480..1465822 1..344 98 -> Plus
3L 1466490..1466907 345..762 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:19 Download gff for FMO01139.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1465480..1465822 1..344 98 -> Plus
arm_3L 1466490..1466907 345..762 100 -> Plus
arm_3L 1467040..1467311 763..1025 95 -> Plus