FMO01139.5prime Sequence
1226 bp (999 high quality bases) assembled on 2008-03-04
> FMO01139.5prime
CAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCAAGGTGGAT
TTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAGCATGCCAC
CGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTCCAGTTCCT
CCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCAGCACCTGC
TGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCCATCCCGGC
CACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTACGTCCACC
GCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTGAGATTGCC
ATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTCGGGCTACC
CGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGACCGGCGTC
TGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCAACTGGTTC
CACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATTCCCCTGGA
GGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGCGGGCGTTT
TTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCTTCCTGGTG
GGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTGGCCAACAT
TACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACTCGGATCCG
TTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACACCCAATAC
TTCGATGGAAGCGCCTTCGCCAAGGGTCCCAGGTGTCGTACATTGCCCAC
CTGACGGGAGCCCTGGCAGGACTACGATCGGCTTTCTGGTGCTAAAGACT
TCGGTCACCGAGAGTACGAGCAGCTCATCTGGTGGCTAGCGTTGGGCGTT
CTACTGTGCTTCACGTCTTCGCATCGTTTTCAACTGATCAACACGGTGAC
CGCTCAGCTGATGAGAGCAGGTGAGGTGATTTACCAGGCATCTGTGCCCG
ACCTGGGAGGTGTCCGCAGCTTCCTGGAACAATCGTTTGGCGCGCGGTCA
GGGAAGGGCCTAAATCTAAACTAATCTAATCATAATCACACTGAGCCTAG
AGAATCTGTCAGGAACGGCTGGATCCCAAAAAAAAGGCCGGCGTACACGA
CGAGTTGAACAATCAGAAGAGAAGTA
FMO01139.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-RB | 3000 | CG1004-RB | 341..1406 | 8..1065 | 4950 | 98.4 | Plus |
rho-RA | 2531 | CG1004-RA | 341..1406 | 8..1065 | 4950 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1466488..1466907 | 343..762 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 1465486..1465822 | 8..344 | 1685 | 100 | Plus |
3L | 28110227 | 3L | 1467039..1467296 | 762..1013 | 895 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:39 has no hits.
FMO01139.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:51 Download gff for
FMO01139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1004-RA | 354..1429 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:19 Download gff for
FMO01139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 335..1410 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:54 Download gff for
FMO01139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-RA | 335..1410 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:54 Download gff for
FMO01139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1467040..1467311 | 763..1025 | 95 | -> | Plus |
3L | 1465480..1465822 | 1..344 | 98 | -> | Plus |
3L | 1466490..1466907 | 345..762 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:19 Download gff for
FMO01139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1465480..1465822 | 1..344 | 98 | -> | Plus |
arm_3L | 1466490..1466907 | 345..762 | 100 | -> | Plus |
arm_3L | 1467040..1467311 | 763..1025 | 95 | -> | Plus |