FMO01140.5prime Sequence
1190 bp (916 high quality bases) assembled on 2008-03-04
> FMO01140.5prime
CAATCGACATGAAAATAGCTGTCGAAGGATGTGCACGTGGCGAGCTGGAA
CGAATATACGACACCATAGAGGGCATCGAAAAGGTTGGCGGCACCAAGAT
CGACTTGTTATTGTGCTGTGGCGATTTTCAGTCCACCCGGAATCTGGAGG
ATTTGCAGACGATGGCTGTACCAAAAAAGTACCTGGATATGTGCTCCTTT
TACAAATACTACAGTGGCGAGCTGGTAGCACCAGTGCTGACCATATTCAT
TGGCGGCAACCATGAGGCCTCCAATTACCTGCAGGAGCTCCCATACGGCG
GTTGGGTGGCTCCAAATATTTACTACCTTGGTTATGCCGGCGTCGTCAAT
GTAAACGGTGTTCGGATAGCTGGAATAAGCGGAATCTTCAAGGGTCACGA
CTTTTTGCGCGGCCATCACGAATTCCCTCCGTATACCGATTCCACGTGTC
GCAGTGTCTACCATGTGCGGCAGCTAGAAGTCTTTCGGCTGAAACAAATT
TCCGGGCGAGTTGATATTTTCCTGTCCCACGACTGGCCCACCGGCATCTA
TGAATACGGAAACAAGGCGCAACTGCTCCGCAAGAAACCATTTTTTGCTG
CAGACATGGAAAGCGGGAAGCTGGGTAGCCAGCCACTGGAGGAGTTACTG
AAAGCGGTCCAACCGGCCTACTGGTTTGCTGCCCATTTGCATTGCAAGTT
TGCCGCTTTGGTGCCGCACAATCACAGCCAGAAGCTAGGAGATGCTGAAT
CTTCCTCTTCCAGCAGCAGCAGTGAAGATGAGACGAGGAAAGGGAGAAGG
TAAAGAAGCTGCTCCTGTACCTCCACCATCCAATCTGTTCCCGTGACCAA
GTTTCTGGCTCTCGACAATGCCTGCCACGTCGTGCTTTCCTGCAGTGTAG
AGGTACTCAGTGACCCCATCGACGCACTCCCGCCTGCATACGACGCAGAG
TGGCTAGCATCTTGCACAGTCAATCACTGATTTCAGTGGAGGAGATTATA
TTTACCTGCCTGAAAAGGCGGGGAAGTTTCAGAGCAATCACTTTACCCGT
GAAAAACTAAGAATGGACGCGAGTTTCGAACTCAGTTCCGTACCTGAGCA
GGCCGCTTCATCCGTGAGACTGATAACAAGTGGGTAACAAGTCCTAACTG
ACTAGCGTTGCCTTGATACCATCGTACTATTTGTGGCATA
FMO01140.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 92..1152 | 8..1048 | 4655 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122163..8122945 | 198..970 | 3345 | 97.8 | Plus |
| 3L | 28110227 | 3L | 8121918..8122115 | 8..205 | 960 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:45 has no hits.
FMO01140.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:53 Download gff for
FMO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-RB | 73..1099 | 1..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:22 Download gff for
FMO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 88..1114 | 1..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:57 Download gff for
FMO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 88..1114 | 1..1016 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:57 Download gff for
FMO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8121914..8122115 | 1..205 | 97 | -> | Plus |
| 3L | 8122171..8122995 | 206..1016 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:22 Download gff for
FMO01140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115014..8115215 | 1..205 | 97 | -> | Plus |
| arm_3L | 8115271..8116095 | 206..1016 | 97 | == | Plus |
