FMO01141.5prime Sequence
1244 bp (974 high quality bases) assembled on 2008-03-04
> FMO01141.5prime
CAGTCGACATGTCATCCGCCGCGAAGAAACGGGAGGCGCAGAAGAAGAAG
GATGCGCGCAACAAGAAGATCCAACAGATACCCTCCACCAAGAAGGCCAA
TGGTGTCCCGGAACGCGAACTGACCGAGGAGGAGAAGCTGTGCGCCAAGC
TGGAGGAGGAGGCCCGGATCAGTGCGGAGGCCCGATCCTGCACCGGATCG
CTGGCGGTGCATCCGCGTTCCCGTGACGTCAAGATCGCCAACTTTTCGAT
CACGTTCTTTGGCTCCGAGCTGCTGCAGGACACCATGCTGGAGTTGAATT
GCGGGCGTCGCTACGGTCTGATTGGCCTGAACGGATGCGGTAAGTCCTCG
CTGCTGGCCGTGCTGGGCGGCAGGGAGGTGCCGGTACCGCCGCACATCGA
CATCTTCCACTTGACGCGCGAAATCCCGGCCAGTTCAAAGAGTGCGCTGC
AGTGCGTCATGGAGGTGGATGAGGAGCGCATTAAGCTAGAGAAGCTGGCC
GAAGAGCTGGCCATGAGCGAGGAAGATGATGCTCAGGAGCAGCTGATCGA
CATCTACGAGCGGCTGGACGATATGTCCGCCGATCTGGCAGAGGTCAAGG
CGGCCCGCATCCTTCACGGTCTTGGCTTCGACAAGGCCATGCAACAGAAA
CAGGCCAAGGACTTCTCAGGTGGTTGGCGTATGCGTATCGCCTTGGCCCG
CGCGCTGTTTGTGAAGCCCCATCTGCTGTTGCTGGACGAGCCGACGAATC
ACTTGGATTTGGACGCCTGTGTGTGGCTGGAGGAGGAGCTTAAGACATAC
AAGCGAATCCTGGGCTCATCTCGCACTCGCAGGATTTCCTCAACGGTGGT
CTGCACAAACATCATTCACCTGACGGGCAAGCGACTCAAGTACTATACGG
GTAACTATGAGGCCTTTGGGCGCACACGCATGGAACTGCTGGAAACCAGA
TGAGCAGTACAACTGGGAACAGGACAGATTTCGCACATGAAGACTACATG
CTCGATCGGTCACGTCGCAAGTGGCGCGACAGGCCAGTTCAAGAAAAAAA
CGCTGCAGAATGGTTGCTCAGGACTCAAAGAGAGGTGTCGACAATAGTGC
TCACTTTACTTCCAATTCTGGGGCAAGGGTGCCCCATCCGTGAATAGGTT
CAGAACGTGAATTCCGATACACAGATGAACTGGGATCACAAATCTGGATC
CGAAATGAACAAACACCGCCTTCGCGGTGGGGTGGTCACCCACC
FMO01141.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 243..1435 | 9..1178 | 5060 | 96.2 | Plus |
| CG9281-RC | 3033 | CG9281-RC | 71..1263 | 9..1178 | 5060 | 96.2 | Plus |
| CG9281-RB | 3205 | CG9281-RB | 243..1435 | 9..1178 | 5060 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15708311..15708974 | 672..9 | 3305 | 99.8 | Minus |
| X | 23542271 | X | 15707912..15708241 | 993..667 | 1390 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:59 has no hits.
FMO01141.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:09 Download gff for
FMO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 71..1148 | 9..1072 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:39 Download gff for
FMO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1320 | 9..1072 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:31 Download gff for
FMO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1320 | 9..1072 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:31 Download gff for
FMO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15707822..15708238 | 670..1072 | 94 | <- | Minus |
| X | 15708314..15708974 | 9..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:39 Download gff for
FMO01141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15601855..15602271 | 670..1072 | 94 | <- | Minus |
| arm_X | 15602347..15603007 | 9..669 | 99 | | Minus |
