FMO01142.5prime Sequence
1237 bp (958 high quality bases) assembled on 2008-03-04
> FMO01142.5prime
CAGTCGACATGATGAAAATGGAGACTGACAAAATAATGGACGAAACCAAC
TCCAATGCACAGGCCTTCACAACCACTATGCTGTACGACCCGGTGCGCAA
GAAAGACTCATCGCCCACCTACCAAACGGAGCGGGAACTCTGCTTTCAGT
ACTTCACCCAGTGGAGCGAGTCGGGCCAGGTGGACTTTGTGGAGCACCTG
CTGTCGCGCATGTGCCACTATCAACACGGACAGATCAATGCCTATCTCAA
GCCGATGCTCCAGCGGGACTTTATCACATTGCTGCCAATCAAGGGTCTGG
ATCACATCGCAGAAAACATTTTGTCGTACTTGGATGCCGAATCGCTCAAA
TCATCCGAGCTGGTCTGCAAGGAATGGCTGCGCGTCATTTCCGAGGGCAT
GCTCTGGAAGAAGCTCATCGAACGCAAGGTGCGCACAGATTCCTTGTGGC
GCGGACTGGCCGAGCGGCGTAATTGGATGCAGTACCTCTTCAAGCCAAGA
CCGGGCCAGACTCAACGGCCACACTCATTCCATCGCGAGTTGTTCCCCAA
GATAATGAATGACATTGACAGCATAGAGAACAACTGGCGGACTGGCCGCC
ACATGCTGCGCCGCATCAACTGCCGGTCCGAGAACTCGAAGGGTGTCTAT
TGTCTGCAGTACGATGACGGCAAGATTGTCTCCGGACTGAGGGACAACAC
CATCAAGATCTGGGATCGCACGGATTTGCAGTGCGTTAAGACCCTAATGG
GCCACACTGGATCGGTGCTGTGCCTGCAGTATGACGACAAGGTGATCATC
AGTGGCTCCAGCGACTCCACCGTCCGCGTGTGGGACGTCAATACCGGCGA
GATGGTCAACACCCTTTATCCACCACTGCGAGGCGGTGCTGCACTTGCGC
TTTAACAATGGCATGATGGTTACCTGCTCCAGGATCGCTCCATCGCGTCT
GGACATGACCTCACCAGCGAGATTACGCTGCGCCGTCTTGTCGTCACCGG
TGCCGCGTCATGTGGGTGACTTTGATGAAAAGTACATCGGGTTCCGCCAG
CGGGGATCGCACCATCAGTCTGTCCAATCTAGCTGTGATTCGTGCGACAC
TGAATGGCAAGCGTGCATCCCCTGCTTCAAATACAAAGATTGCCTGTGGT
TCCCGCGACCTCACATCCTAAAGCCGTGGGGTCACATGGAGTGCGGGCCG
TACGTGCTCGGGAGGCCATAGAGAAAAGTGGCTGCTC
FMO01142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-RB | 3492 | CG3412-RB | 492..1646 | 9..1146 | 5050 | 96.9 | Plus |
| slmb-RC | 2549 | CG3412-RC | 492..1646 | 9..1146 | 5050 | 96.9 | Plus |
| slmb-RA | 3492 | CG3412-RA | 492..1646 | 9..1146 | 5050 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21122321..21122593 | 561..289 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 21125162..21125384 | 288..66 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 21121674..21122009 | 1067..739 | 1045 | 93.5 | Minus |
| 3R | 32079331 | 3R | 21122072..21122251 | 740..561 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 21126938..21126994 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:28:01 has no hits.
FMO01142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:10 Download gff for
FMO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3412-RA | 480..1599 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:44 Download gff for
FMO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1604 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:36 Download gff for
FMO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1604 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:36 Download gff for
FMO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21125162..21125384 | 66..288 | 100 | <- | Minus |
| 3R | 21126938..21126998 | 1..65 | 93 | | Minus |
| 3R | 21121674..21122007 | 741..1067 | 94 | <- | Minus |
| 3R | 21122072..21122251 | 561..740 | 100 | <- | Minus |
| 3R | 21122322..21122593 | 289..560 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:44 Download gff for
FMO01142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16947396..16947729 | 741..1067 | 94 | <- | Minus |
| arm_3R | 16947794..16947973 | 561..740 | 100 | <- | Minus |
| arm_3R | 16948044..16948315 | 289..560 | 100 | <- | Minus |
| arm_3R | 16950884..16951106 | 66..288 | 100 | <- | Minus |
| arm_3R | 16952660..16952720 | 1..65 | 93 | | Minus |
