FMO01144.5prime Sequence
1233 bp (990 high quality bases) assembled on 2008-03-04
> FMO01144.5prime
CAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGGACATCAAT
CGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAACCCGTGGG
TCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGGAACCAGCA
CGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGGCGGTCCAT
GCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATGGATCACGA
GAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCCCGCCGATT
CGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGATGGACGCC
GATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGATCATGTCCA
GTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCACAGCGCTG
GGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAAACGAGGAC
TGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCAGAAAGCGA
GATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGAGATCATGC
TCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGGTGGGCTGC
ATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGAACCGATCA
CATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCCAGCTGATG
AGTTCATGAGCCGCATCTCCTCGGAGAGCGCTAGAAACTATATTCGTTCA
CTGCCGGTGATGCCGCGCCGCAATTTCCGCGACATCTTCCGCGGTGCCAA
TCCGCTGGCCATCGATTTGCTGGAGAAGATGCTGGAACTTGACGCCGACA
GCGCATAACCGCCGAGCAGGCGCTGGCTCATCCGTACATGGAGAGTACCA
CGATCCAACCGATGAGCAGACCGCGCCGCTCTACGACCAGAGCTTCCAGG
AAAACGAGCTGCCGGTGGAAATGGCGGAAATGTTCTTCACGAGGTGACGG
CCTCAGCCACGCCGCCCTCCCTGAGCTCTCTGCTAAGAGCAGGCAGCTTT
CTAAACATTGTTTGGCGCGGCCCGGGATGTCTACATATCTAAACCTAGCA
AATCCACTAGCTAGGATCTGACTTGACATGGCTTGGAATCCCAATAACAG
CCCCGGCACCGGAGCGTCTGCAACTTTGGATGA
FMO01144.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-RA | 1821 | CG7393-RA | 206..1289 | 5..1078 | 5020 | 98.2 | Plus |
p38a-RC | 1474 | CG5475-RC | 215..925 | 33..743 | 1255 | 78.7 | Plus |
p38a-RB | 1634 | CG5475-RB | 375..1085 | 33..743 | 1255 | 78.7 | Plus |
p38a-RC | 1474 | CG5475-RC | 1028..1185 | 846..1001 | 215 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13780996..13782012 | 5..1019 | 4895 | 99.2 | Plus |
3R | 32079331 | 3R | 24150965..24151675 | 743..33 | 1215 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:28:12 has no hits.
FMO01144.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:54 Download gff for
FMO01144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7393-RA | 196..1273 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:50 Download gff for
FMO01144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 203..1280 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:43 Download gff for
FMO01144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 203..1280 | 1..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:43 Download gff for
FMO01144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13780993..13782050 | 1..1053 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:50 Download gff for
FMO01144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13780993..13782050 | 1..1053 | 98 | == | Plus |