FMO01145.5prime Sequence
1200 bp (984 high quality bases) assembled on 2008-03-04
> FMO01145.5prime
CAGTCGACATGTCGTTCTTCGGATCCAACACGTCGCTGGGAGCAACAAGC
ACGCCGGCCAAAACAACCGGTGGCCTCTTCGGATCGCCGTTTGGAGGCAC
AGCTGCAACCAGCCAGCCAGCACCCGCTTTCGGAGCACAGGCCACATCGA
CTCCGGCTTTTGGCGCCCAACCGGCGACTTCTGCCTTCGGAGCAGGTTCC
GCCTTTGGAGCAACCGCTGCAGCCCCGGCTTTTGGAGCCGCCACAGGAAC
TTCTGCCTTTGGCGGCTCCGCCTTTGGCAGTACTCCGGCATTTGGTGCGG
CGACAACCACAACTGCGGGCACGGGTTTGGGAGGAGGCGGTTTCGGCGGA
TTTGGAGCAGCTCCGGCAACAAGTCAGGCCGGTCTGTTCGGCGCTCCAGC
GACTAGTGCAGCACCACCAGCTTTTAGCGGATTCGGCCAACAGGCAGCTG
CGAGTACAGCGCCAGCAAGTGGATTTTCAGGCTTTGGCACAACCACAACG
TCGGCACCTGCTTTTGGTGGCTTTGGCACCAGCCAGTCCACTGGCTTTGG
GGGCGGAGCCTTCGGATCCACGTTCGGAAAACCAGCGAATACAACAGTTA
CGCCGGGATTTGGTGGATTCGGAGGCACCAGTTTTATGCTTGGACAGCCG
CAACAGCAGCCAGCGCCCATATCGGCTGACGAGGCGTTTGCCCAATCCAT
TCTGAATGTATCCATTTTCGGGGATGAACGGGACAAAATAGTGGCCAAAT
GGAACTACTTGCAGGCTACGTGGGGCACTGGGAAATGTTTTACTCCCAGA
GTGCGGCACCGGTAGACATTACGCCGGAGAACGTGATGTGCCGGTTCAAG
GCCATAGGCTACAGTCGTATGCCGGGCAAGGATAACAAGTTGGGACTGGT
GCTCTTAACTTCTGCAGAGACTCTCAGCTGTCAGCACACCAGCAACAAGT
GATTCAACGCTTCACAGTTTATTCGGCAGCAAGCCCAACATGCTGGTCAT
TAGATTCCATCAGGTTGAGAACCAAACGTGCCAAATTTTTATTTAGTCAG
GAGACTCCACATGCTCCACGAAGCAGCGTTACTTGGCTCGAACTCCACTA
CCTTATTCAGCAAGCGGAACCAGCTCAATATCTAGGTTGGGAGCCTGCTG
TTCGGCAGATATGAGAACTTGGAACTACCCGCGCCTATCCTACTGATGCT
FMO01145.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup54-RA | 2048 | CG8831-RA | 163..1291 | 8..1110 | 4900 | 96.9 | Plus |
CG43204-RA | 641 | CG43204-RA | 227..282 | 63..8 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12429954..12430460 | 570..64 | 2535 | 100 | Minus |
2R | 25286936 | 2R | 12429529..12429894 | 933..571 | 1680 | 99.2 | Minus |
2R | 25286936 | 2R | 12430882..12430937 | 63..8 | 280 | 100 | Minus |
2R | 25286936 | 2R | 12429409..12429469 | 994..935 | 255 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:24:28 has no hits.
FMO01145.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:56 Download gff for
FMO01145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8831-RA | 153..1219 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:39 Download gff for
FMO01145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup54-RA | 157..1223 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:16 Download gff for
FMO01145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup54-RA | 157..1223 | 1..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:16 Download gff for
FMO01145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12429528..12429894 | 571..933 | 98 | <- | Minus |
2R | 12429954..12430460 | 64..570 | 100 | <- | Minus |
2R | 12430882..12430940 | 1..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:39 Download gff for
FMO01145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8317033..8317399 | 571..933 | 98 | <- | Minus |
arm_2R | 8317459..8317965 | 64..570 | 100 | <- | Minus |
arm_2R | 8318387..8318445 | 1..63 | 93 | | Minus |