Clone FMO01145 Report

Search the DGRC for FMO01145

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:11
Well:45
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNup54-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01145.5prime Sequence

1200 bp (984 high quality bases) assembled on 2008-03-04

> FMO01145.5prime
CAGTCGACATGTCGTTCTTCGGATCCAACACGTCGCTGGGAGCAACAAGC
ACGCCGGCCAAAACAACCGGTGGCCTCTTCGGATCGCCGTTTGGAGGCAC
AGCTGCAACCAGCCAGCCAGCACCCGCTTTCGGAGCACAGGCCACATCGA
CTCCGGCTTTTGGCGCCCAACCGGCGACTTCTGCCTTCGGAGCAGGTTCC
GCCTTTGGAGCAACCGCTGCAGCCCCGGCTTTTGGAGCCGCCACAGGAAC
TTCTGCCTTTGGCGGCTCCGCCTTTGGCAGTACTCCGGCATTTGGTGCGG
CGACAACCACAACTGCGGGCACGGGTTTGGGAGGAGGCGGTTTCGGCGGA
TTTGGAGCAGCTCCGGCAACAAGTCAGGCCGGTCTGTTCGGCGCTCCAGC
GACTAGTGCAGCACCACCAGCTTTTAGCGGATTCGGCCAACAGGCAGCTG
CGAGTACAGCGCCAGCAAGTGGATTTTCAGGCTTTGGCACAACCACAACG
TCGGCACCTGCTTTTGGTGGCTTTGGCACCAGCCAGTCCACTGGCTTTGG
GGGCGGAGCCTTCGGATCCACGTTCGGAAAACCAGCGAATACAACAGTTA
CGCCGGGATTTGGTGGATTCGGAGGCACCAGTTTTATGCTTGGACAGCCG
CAACAGCAGCCAGCGCCCATATCGGCTGACGAGGCGTTTGCCCAATCCAT
TCTGAATGTATCCATTTTCGGGGATGAACGGGACAAAATAGTGGCCAAAT
GGAACTACTTGCAGGCTACGTGGGGCACTGGGAAATGTTTTACTCCCAGA
GTGCGGCACCGGTAGACATTACGCCGGAGAACGTGATGTGCCGGTTCAAG
GCCATAGGCTACAGTCGTATGCCGGGCAAGGATAACAAGTTGGGACTGGT
GCTCTTAACTTCTGCAGAGACTCTCAGCTGTCAGCACACCAGCAACAAGT
GATTCAACGCTTCACAGTTTATTCGGCAGCAAGCCCAACATGCTGGTCAT
TAGATTCCATCAGGTTGAGAACCAAACGTGCCAAATTTTTATTTAGTCAG
GAGACTCCACATGCTCCACGAAGCAGCGTTACTTGGCTCGAACTCCACTA
CCTTATTCAGCAAGCGGAACCAGCTCAATATCTAGGTTGGGAGCCTGCTG
TTCGGCAGATATGAGAACTTGGAACTACCCGCGCCTATCCTACTGATGCT

FMO01145.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Nup54-RA 2048 CG8831-RA 163..1291 8..1110 4900 96.9 Plus
CG43204-RA 641 CG43204-RA 227..282 63..8 280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12429954..12430460 570..64 2535 100 Minus
2R 25286936 2R 12429529..12429894 933..571 1680 99.2 Minus
2R 25286936 2R 12430882..12430937 63..8 280 100 Minus
2R 25286936 2R 12429409..12429469 994..935 255 98.4 Minus
Blast to na_te.dros performed on 2014-11-28 22:24:28 has no hits.

FMO01145.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:56 Download gff for FMO01145.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8831-RA 153..1219 1..1054 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:39 Download gff for FMO01145.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup54-RA 157..1223 1..1054 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:16 Download gff for FMO01145.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup54-RA 157..1223 1..1054 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:16 Download gff for FMO01145.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12429528..12429894 571..933 98 <- Minus
2R 12429954..12430460 64..570 100 <- Minus
2R 12430882..12430940 1..63 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:39 Download gff for FMO01145.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8317033..8317399 571..933 98 <- Minus
arm_2R 8317459..8317965 64..570 100 <- Minus
arm_2R 8318387..8318445 1..63 93   Minus