FMO01146.5prime Sequence
1186 bp (887 high quality bases) assembled on 2008-03-04
> FMO01146.5prime
CAGTCGACATGACAACGCCCACGCGCGCCACCCTGGAAAAGGCTCTGAAA
AGCGACCAGAAGCTTGTGAATTCCGCCACACAGATAGCCAAGGATCTGAC
CGCCAAGGCATATGACATATCTGCTCTGGCCGAGGCACTGGGCTTCGCCC
TGTCCTCTCCGGACATGGAGGAGCGTGTGGCCGGAACCAACTTGCTCTCC
GCCGTGTTGATAGCACTGCCCCAGGATCTGCTGCAAGAGCGGCAGCTGGA
GTTCCTCAGCACCTTTTACATGGACCGCCTGCGCGACCATCACAACGTAA
TGCCAGCCATTATCGATGGAATCGACGCCCTGGTTCACATGAAAGCTCTA
CCGCGCGCCCAGATTCCCCAGATTCTGCAGTCATTCTTCGAGCACACCAC
CTGCCAGTCGCAGACGCGGAGCGACTGCACCAAGCTGTTCCACATTTTCC
AGTACTTGACGGAAAACTTCCAGGACGAGCTGCAAGCGATGGCCGGTGAC
TTCGTCTACGGCCTGATCAATTCCATTGACGGCGAGCGTGACCCCCGCAA
CCTTGACATCATTTTCAGCTTCATGCCCGAGTTCTTGTCAACGTATCCGC
TGCTGCATTTGGCCGAAGAGATGTTTGAGATCTTTGCGTGTTACTTTCCA
ATCGACTTTAATCCCAGCAAGCAGGATCCAGCGGCCATAACTCGTGATGA
ATTGTCCAAGAAGTTGACTAACTGCCTGGTAGCCAACAACGAATTCGCTG
AGGGCACAGTGGTACTGGCCATAGAAAAGCTGGAGAGTGAGTTGCTGGTT
GCCAAACTGGACTCCATAGAACTGCTGCACTAAGCTGCCGTGAAGTTCCC
GCCTTCCGTTCTGGAGCCGCACTTCGATCAGATATGGCAGCTCTGAAAAC
AGAGACTTTTCAGGAATGACATGAGAGATACTGAAAGCTTCCTTAAGGCG
TTGTCTGCGCTCCTGGAGAGAGCTGCTCACTACGGAAATAAGCCCAGCTA
CAGAGCTCTATTCTGGGGTATCTACCGCATCTCGCGAGTCAATCACGTCT
TCATCTGCACGGGATCGCCTAAGTTGGATCGGAATGCCTATGACGAAATC
TCAAGCTTTGTCAGGTGAGGGCGAGTCATCGAACCGATCGACTATACAGT
ACAGTCTAAGCTCTGGGGTGCGGCTCTCCGAATGGA
FMO01146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mms19-RB | 3233 | CG12005-RB | 100..1188 | 9..1075 | 4840 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5232790..5233174 | 93..477 | 1910 | 99.7 | Plus |
| 3R | 32079331 | 3R | 5233384..5233734 | 477..827 | 1740 | 99.7 | Plus |
| 3R | 32079331 | 3R | 5233792..5233951 | 827..980 | 490 | 94.4 | Plus |
| 3R | 32079331 | 3R | 5232642..5232726 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:59 has no hits.
FMO01146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:02 Download gff for
FMO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12005-RB | 92..1154 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:12 Download gff for
FMO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mms19-RB | 95..1157 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:20 Download gff for
FMO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mms19-RB | 95..1157 | 1..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:20 Download gff for
FMO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5232637..5232726 | 1..93 | 95 | -> | Plus |
| 3R | 5232791..5233174 | 94..477 | 99 | -> | Plus |
| 3R | 5233385..5233731 | 478..824 | 99 | <- | Plus |
| 3R | 5233791..5234031 | 825..1050 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:12 Download gff for
FMO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1058359..1058448 | 1..93 | 95 | -> | Plus |
| arm_3R | 1058513..1058896 | 94..477 | 99 | -> | Plus |
| arm_3R | 1059107..1059453 | 478..824 | 99 | <- | Plus |
| arm_3R | 1059513..1059753 | 825..1050 | 91 | == | Plus |
