FMO01148.5prime Sequence
1173 bp (925 high quality bases) assembled on 2008-03-04
> FMO01148.5prime
CAGTCGACATGGACCAGCCCGACGACCATTTCCGCTACATACACAGCTCC
TCGCTCCACGAGCGAGTGCAAATCAAGGTAGGGACGCTCGAGGGGAAAAA
GCGCCAGCCGGACTATGAGAAACTGCTAGAGGATCCGATCCTGAGATTCT
CGGGCCTGTACTCCGAGGAGCACCCCTCGTTCCAGGTGCGCCTGCAGGTG
TTCAACCAGGGCAGACCCTACTGCCTCCCAGTGACCAGCTCCTACAAGGC
GTTCGGCAAGCGATGGAGCTGGAACGAGTGGGTGACGCTGCCGCTGCAAT
TCTCCGACCTGCCCAGAAGCGCCATGCTGGTGCTGACCATCCTGGACTGC
TCGGGCGCTGGCCAGACCACGGTCATTGGAGGCACCTCCATCTCAATGTT
CGGCAAGGACGGCATGTTCCGTCAGGGAATGTACGACTTGCGAGTGTGGC
TGGGGGTCGAGGGCGATGGCAACTTTCCCAGTCGCACGCCCGGCAAGGGC
AAGGAGTCGTCCAAGTCGCAGATGCAGCGCCTAGGAAAGCTGGCCAAGAA
ACACAGGAACGGCCAGGTGCAAAAGGTGGACTGGCTGGACAGACTGACGT
TTCGCGAAATCGAGGTGATCAACGAGCGCGAAAAGCGTATGTCGGACTAT
ATGTTTCTTATGATCGAGTTTCCCGCCATCGTGGTGGATGACATGTACAA
CTACGCCGTGCTCTACTTCGAGCCGGAGGGTGACGTCAAATACAAGCTGC
CGGCCAAACCTAAGCTGGTTTCTGTGCCGGACTCCGAGATCCAAATGGAA
AATCTGGTCGAGCGCAAGCACCATCGATTGGCCCGTTCGGAGCGTTCAGG
CATCTCGGACAGAGATGCCAAGCCGACAGCCAGCATTCGCGATCAGCTCC
ACACGATTGTCTATAGGTATCCACCCACTATGTTCTGAGCAGCGGGGGAG
CAGGATCTGGGTGTGGAGTTTCGCTTTTATCCTCTCCTCGCACAAAAAGG
CTTCTGACCAGGTTCTCAGTGCATTCAATTGGAAGCTGGGAGGAGCAGTT
ACCAGGTCCTTGGAGTGCTGCCAACTGGGCGCCCATGGGACTGGAGAATG
CTTGGACTGTCTGATCAACTTTAACCACCGCAGGGTGCGAAGATCTCGTT
AGCATGGGACCCAGAGCCACAGA
FMO01148.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi3K59F-RA | 3164 | CG5373-RA | 82..1181 | 9..1106 | 4955 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23560719..23561340 | 80..701 | 3080 | 99.7 | Plus |
| 2R | 25286936 | 2R | 23561398..23561579 | 702..883 | 895 | 99.5 | Plus |
| 2R | 25286936 | 2R | 23561632..23561752 | 881..1002 | 375 | 92.7 | Plus |
| 2R | 25286936 | 2R | 23560573..23560643 | 9..79 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:37 has no hits.
FMO01148.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:05 Download gff for
FMO01148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5373-RA | 73..1183 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:35 Download gff for
FMO01148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 75..1185 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:27 Download gff for
FMO01148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 75..1185 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:27 Download gff for
FMO01148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23560566..23560643 | 1..79 | 94 | -> | Plus |
| 2R | 23560719..23561340 | 80..701 | 99 | -> | Plus |
| 2R | 23561398..23561579 | 702..883 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:35 Download gff for
FMO01148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19448089..19448166 | 1..79 | 94 | -> | Plus |
| arm_2R | 19448242..19448863 | 80..701 | 99 | -> | Plus |
| arm_2R | 19448921..19449102 | 702..883 | 99 | -> | Plus |
