FMO01152.5prime Sequence
1237 bp (939 high quality bases) assembled on 2008-03-04
> FMO01152.5prime
CAGTCGACATGTCATGGGAGAGCATTAACTCCAAGGATCTCCTTAGCATC
CCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCACCTGATGG
ATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTTAGATGAGA
GTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAGGATCCCGT
TCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTTATCAGTTG
CTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAAACGGAAGA
TCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGGAGGCCGTA
CGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAGGACTGCTT
TCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGGAAAATTTC
GTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAGAGGAGCTT
GATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGCAGGGCACA
CGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAGGCACTCAC
TTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCCATTTGACG
GTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCTTTGGAGGG
TTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCCATCACTGG
AGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACGCCTTCAGGAT
AACGATAAAAGTGCAACATACGCTTCTAAAGCCTACGACTTATCACGATC
CCTGCACTCGGTGACCTAAACTCATGCCACCATAGAGCAGCTCTATTGCG
AATGGCGGTTTCTCTCCGAAAGCAGGGTGAGCTTGGAGATGACCAGATTA
TTGTAAGGAGGCACAAGCTTTCCCTATTTCTGGAGAACCAGGCGACTTAC
ACGAGAAGTATTTCCGTCATGGGCGAACTATAACCGAAATAAAAGGGACA
TGAGTCGTGCATTCCGCACATGACAAGCTATGGTACTTCGGCAGCCTAGG
GATCTATGACCCATGAGCTAGTGATGGGAGCACTGTGCTTGAACCTCCTG
CTCACACAGATCTGCAATGACACTATAACGTTCGGAGTGCATCAATGTGA
GCGAGTTCGTGGTGCGATATCGTGCAGCAGGGTGTGA
FMO01152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1909-RB | 2374 | CG1909-RB | 155..1270 | 8..1113 | 5060 | 97.7 | Plus |
| CG1909-RA | 2401 | CG1909-RA | 182..1297 | 8..1113 | 5060 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 585297..585773 | 484..958 | 2270 | 99.4 | Plus |
| 4 | 1348131 | 4 | 584988..585174 | 298..484 | 935 | 100 | Plus |
| 4 | 1348131 | 4 | 584761..584931 | 129..299 | 855 | 100 | Plus |
| 4 | 1348131 | 4 | 583933..584018 | 44..129 | 430 | 100 | Plus |
| 4 | 1348131 | 4 | 585849..585935 | 965..1052 | 220 | 91 | Plus |
| 4 | 1348131 | 4 | 583825..583863 | 8..46 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:45:37 has no hits.
FMO01152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:03 Download gff for
FMO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RB | 110..1203 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:16 Download gff for
FMO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RA | 174..1267 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:09 Download gff for
FMO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RA | 174..1267 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:09 Download gff for
FMO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 583817..583863 | 1..46 | 93 | -> | Plus |
| 4 | 583936..584018 | 47..129 | 100 | -> | Plus |
| 4 | 584762..584931 | 130..299 | 100 | -> | Plus |
| 4 | 584990..585174 | 300..484 | 100 | -> | Plus |
| 4 | 585298..585772 | 485..957 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:16 Download gff for
FMO01152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 604443..604489 | 1..46 | 93 | -> | Plus |
| arm_4 | 604562..604644 | 47..129 | 100 | -> | Plus |
| arm_4 | 605388..605557 | 130..299 | 100 | -> | Plus |
| arm_4 | 605616..605800 | 300..484 | 100 | -> | Plus |
| arm_4 | 605924..606398 | 485..957 | 99 | -> | Plus |
