FMO01153.5prime Sequence
1200 bp (994 high quality bases) assembled on 2008-03-04
> FMO01153.5prime
CAGTCGACATGTGGAAGGCAAGTGCCGGTCACCAGATTCAGGCCACCAGT
GCAGCCTCCGCGGAGGACGACGACTGGGAGACGGATCCGGACTTCGTGAA
CGATGTCAGTGAGCAGGAGCAGCGCTGGGGATCAAAGACGATCGACGGCA
GCGGTCGCACAGCAGGCACCATCGACATGGACAAGCTGCGCGAGGAGACG
GAGCAGGCCGATCTGGACAAGAAGAAGCAGCTGCTGAAGGATCAGAACGC
AGGATACGGATACGGGGGCAAGTTTGGCGTTGAGAAGGACCGCATGGACA
AGTCGGCTGTGGGTCATGACTACCAGGGCAAGGTGGGAAAGCACGCCTCG
CAGAAGGACTACAGCGATGGTTTTGGGGGAAAGTTCGGAGTGCAAGAGGA
TCGCAAGGACAAGTCTGCCGTGGGCTGGGACCACGTCGAAAAGGTCGAGA
AGCACGCCTCCCAGAAGGATTACGCCACCGGCTTCGGAGGCAAATTTGGA
GTGCAGTCCGATCGGGTGGATAAATCCGCCGTGGGCTGGGATCACATCGA
GAAGGTGGAGAAGCACGAGTCTCAGAAGGATTACTCCAAGGGCTTTGGCG
GCAAGTTTGGCGTTCAGGAGGACCGAAAGGACAAGTCCGCGGTGGGATGG
GACCACAAAGAGGCTCCGCAGAAGCACGCCAGCCAGGTGGACCACAAGGT
CAAGCCAGTCATCGAAGGTGCCAAGCCTTCCAATTTGCGTGCCAAGTTCG
AGAATCTGGCTAAAAACTCCGAGGAGGAGTCACGTAAGCGGGCCGAGGAA
CAGAAACGTCTCCGTGAGGCCAAGGACAAGCGGGATCGGGAGGAAGCCGC
CAAGAAGACTGTGGCCGAGAACACTCCTCGTACCTCGACGGAAGCACCGC
CTCCAAAGGGCAGCAGGCGGTCATCCAGACAGGTCGGACGGTGCATGGCA
TGCTTTCAGTGCATTAACAGATGCAGTCGCCTGTTTCTGAAACCCTCCAG
CACGAAGAACCATATCATTTCCTAGGCGCAGCTGTTAAATAGAATAGAAG
CAGAGGAGCACCGCAGTTACAACTCGCTTGCGTGTCTATCCGACGGGTCC
GCTCGAGAGCGAACGGTCATGCCAGTTGCATCACACCATGGTCCAATAGT
GAACTGAACGCCTCGAATGATGCTAATCATGTGGTGCGAGCTCTCCCCGA
FMO01153.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cortactin-RD | 2388 | CG3637-RD | 163..1227 | 9..1058 | 4885 | 98.1 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 166..1230 | 9..1058 | 4885 | 98.1 | Plus |
| Cortactin-RB | 2419 | CG3637-RB | 194..1258 | 9..1058 | 4885 | 98.1 | Plus |
| Cortactin-RD | 2388 | CG3637-RD | 418..700 | 375..657 | 305 | 74.3 | Plus |
| Cortactin-RD | 2388 | CG3637-RD | 529..811 | 264..546 | 305 | 74.3 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 421..703 | 375..657 | 305 | 74.3 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 532..814 | 264..546 | 305 | 74.3 | Plus |
| Cortactin-RD | 2388 | CG3637-RD | 484..588 | 552..656 | 195 | 79 | Plus |
| Cortactin-RD | 2388 | CG3637-RD | 706..810 | 330..434 | 195 | 79 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 487..591 | 552..656 | 195 | 79 | Plus |
| Cortactin-RC | 2391 | CG3637-RC | 709..813 | 330..434 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21063426..21063829 | 579..176 | 2020 | 100 | Minus |
| 3R | 32079331 | 3R | 21062900..21063335 | 1006..579 | 1780 | 96.6 | Minus |
| 3R | 32079331 | 3R | 21063898..21064064 | 175..9 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 21063459..21063741 | 657..375 | 305 | 73.9 | Minus |
| 3R | 32079331 | 3R | 21063426..21063630 | 468..264 | 215 | 73.7 | Minus |
| 3R | 32079331 | 3R | 21063571..21063675 | 656..552 | 195 | 79 | Minus |
Blast to na_te.dros performed 2014-11-28 20:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5609..5663 | 62..116 | 122 | 69.1 | Plus |
FMO01153.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:16 Download gff for
FMO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3637-RA | 212..1207 | 6..995 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:23 Download gff for
FMO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cortactin-RB | 192..1187 | 6..995 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:01 Download gff for
FMO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cortactin-RB | 192..1187 | 6..995 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:01 Download gff for
FMO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21062912..21063334 | 580..995 | 97 | <- | Minus |
| 3R | 21063426..21063829 | 176..579 | 100 | <- | Minus |
| 3R | 21063898..21064066 | 6..175 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:23 Download gff for
FMO01153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16889620..16889788 | 6..175 | 99 | | Minus |
| arm_3R | 16888634..16889056 | 580..995 | 97 | <- | Minus |
| arm_3R | 16889148..16889551 | 176..579 | 100 | <- | Minus |
