FMO01155.5prime Sequence
1232 bp (975 high quality bases) assembled on 2008-03-04
> FMO01155.5prime
CAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTGCCTCGAAT
CCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTATCCATTAG
CGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGTTGAAGCCT
GGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTGAGGATCAC
ATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGTCAAGGAAG
CATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACCAACGGAGC
AGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTGGTGCAGTG
CCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCGCAGGTCTC
CGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGGACTGCGCG
AGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCGGCGTTTCA
TCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTGGTAGCGGG
AGGAGCAAACACCGCCACCTCTTCCAACTCATCCAAGTGGATGCTCTCCC
CCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCAGTAAACTC
AAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGAGCTGGAGA
AGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAACAAGTACG
AGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCGATTCCGAG
GCTTCGGAGTTCTTTCACAAGACAGCGATGAAGGAGGTGGGGGCATCTTT
AGCAAATGCAGATGGTGACAAGCAATTTGCCGGAAACCATCCATAAATCC
AACAGGTTGCTTATCACAAGGTGGACAAGACAGCTCATTTGCCAATTGTG
AGAAACTTCGCGATAAGAACAAGAAACCCACAACAGCTGCCCATCAAGGC
GGCCCAACACTAAATCTCATGGCTGGCGCGGTAGCTGCCAAGCTGAAGAA
CTGCCAGGCGGCCGAATCCGACCGTGGATCATCGGATCTGCCAGTGACTG
GCGGCAAAGAATGAGATATGTTGAAGAACCTCCCGAACAGCAACACGCCT
CCTCTGGCCACGAATGGAGTGAAAGCAGCCGGAAACGAAGCCTGCCACCA
TCAAATGAAGGTGAACCCCAGAGCAAGAGCTG
FMO01155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nak-RD | 5364 | CG10637-RD | 1943..3067 | 8..1122 | 5135 | 97.8 | Plus |
| Nak-RA | 5196 | CG10637-RA | 1943..3067 | 8..1122 | 5135 | 97.8 | Plus |
| Nak-RE | 4280 | CG10637-RE | 1943..2415 | 8..480 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18960055..18960682 | 1098..479 | 2530 | 96.5 | Minus |
| 2L | 23513712 | 2L | 18963170..18963412 | 250..8 | 1215 | 100 | Minus |
| 2L | 23513712 | 2L | 18962885..18963115 | 480..250 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:31 has no hits.
FMO01155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:17 Download gff for
FMO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10637-RA | 1916..3035 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:13 Download gff for
FMO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1939..3058 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:51 Download gff for
FMO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1939..3058 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:51 Download gff for
FMO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18962885..18963115 | 250..480 | 100 | <- | Minus |
| 2L | 18963171..18963416 | 1..249 | 98 | | Minus |
| 2L | 18960055..18960680 | 481..1098 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:13 Download gff for
FMO01155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18960055..18960680 | 481..1098 | 97 | <- | Minus |
| arm_2L | 18962885..18963115 | 250..480 | 100 | <- | Minus |
| arm_2L | 18963171..18963416 | 1..249 | 98 | | Minus |
