FMO01158.5prime Sequence
1120 bp (960 high quality bases) assembled on 2008-03-04
> FMO01158.5prime
CAGTCGACATGACAACCGACGAGAGCATAATGGAGGAGATGCTGGAGAGA
GCAACAAATCCGGCACAGAAAATCGACGAACTGGGCGTGCAAATGTTCTG
CATTGTGGTCAAAAGCAACGCCCAATTGGTGCACAAGGCGCAGGAGATGA
TTGTGGCCAAGGTGCGATCCACAAATGTGACGGAGGCGACGCGAGCGATT
TCGCTGCTGGAGGAGTGCATGACGCAGTGCGGCGACGACTTCCAGGACGA
GGCGTCCAAATTCCGCTTTCTCAACGAACTGATACGCCTGGTATCGAAGA
AGTACAAGGGCGCCGAGACGCCGCACGAAGTGAAGCAGCGGATCATGGAG
TGCCTACTGCTGTGGACCACCGAGTTCCCGCAGCGTCAGAAGATACGCGA
TGCCTACGACATGTTGCGCAAGGAGGGGGACATCGAACACGGCACCACGG
AGGCGGCGGTGGCCAAAAGGGAGAGTGTACTGGGCACTATTGACGAGGCC
ATGTTCGCCAAGCTGATCAAGAGCAATAATCCCGAGAACTTCAAGCGGGC
CAATCTACTGCTGCAGTATCGGATGGCACAGGAGGCGCGTCGCAACGATC
TGCTGGCCCAGCATCGTCTAGTCCTTTGCGAGGTGCAGGAGACGATGCAG
CTGCTCAACCAAATGCTGGACACCTACGATCCCGCCAACCAGGACGTCAG
CGAAACACTGCACGAGCTATACAAGAGCTGCAGAAGCACAAGCCCATCTT
TCAGCATCTGCCGCAGCTGCTGGACGATTCCGATGCGCAGCTTGTAGCTG
ACACTCTGGATGCCAATTGCGCTCTACTGGCCACCATGCAGCGCTACAAG
CTTCTGGTGCCATCGCCCACAAGGAGCACCGCTGCTGCCTGACCACGAGT
GCTCCAACAGTAGCTAGTTCAGTGAAGTCGACGGCCAGCTCGACCACCGC
CACCAACTAGCTCCAATAACGCCCAGTGCTGACCGAACTGCTCCGGCGAT
TTGCTCATCGACGGAGCCATAAAGCTGCCACTACAGGCTCCCACAAGCCA
CCAAATGTCCGCCGGTTAGCGGTTCCGAATCCGCTGGGCCGAATTAAGGT
AACTTCTAAGATGCTTGGCC
FMO01158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gga-RB | 2360 | CG3002-RB | 111..1198 | 9..1098 | 5055 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9602080..9602675 | 203..797 | 2930 | 99.8 | Plus |
| X | 23542271 | X | 9602743..9602984 | 796..1036 | 910 | 96.3 | Plus |
| X | 23542271 | X | 9601253..9601411 | 45..203 | 795 | 100 | Plus |
| X | 23542271 | X | 9601140..9601176 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:30:43 has no hits.
FMO01158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:12 Download gff for
FMO01158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3002-RB | 100..1202 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:40 Download gff for
FMO01158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gga-RB | 104..1206 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:45 Download gff for
FMO01158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gga-RB | 104..1206 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:45 Download gff for
FMO01158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9601254..9601411 | 46..203 | 100 | -> | Plus |
| X | 9601133..9601176 | 1..45 | 91 | -> | Plus |
| X | 9602081..9602675 | 204..797 | 99 | -> | Plus |
| X | 9602745..9603050 | 798..1107 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:40 Download gff for
FMO01158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9495166..9495209 | 1..45 | 91 | -> | Plus |
| arm_X | 9495287..9495444 | 46..203 | 100 | -> | Plus |
| arm_X | 9496114..9496708 | 204..797 | 99 | -> | Plus |
| arm_X | 9496778..9497083 | 798..1107 | 92 | | Plus |
