FMO01159.5prime Sequence
1190 bp (964 high quality bases) assembled on 2008-03-04
> FMO01159.5prime
CAGTCGACATGGCTGGCAAGCGACAAGCCACTTCGAACCTGAACCACGAA
AACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTCCGCACGGC
CACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCGCCGCAAGA
TTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAGAAAAGACT
GCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGCAAGCCGGC
TGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAATGTGACGG
CACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCATTCTCGTTC
GGGTTCAGCTTTGGTTCCAGTTCGGCCGATCGGCCTGTCAGCACTAGCAT
TTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTTGCCGGCCA
AGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCTCGATATTT
GGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAAACCAGCAG
CAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTACCGTGAAA
GCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGGACCAAATG
GGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAACTATGATGA
GCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAACTCCACGA
AATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGCAAAGGTGTCC
CGTGCATCGTCGCCACCAAAAGCGGCTACTACGTTTACGTTTGGCAAGCC
CAGCGCGCCAATAGGCGCCAGCGTATCGCCCTTAGCCAAGAAACCCAACT
GCACCATACCAGTGGTGGACACACACGACCGCAACACCACTGGTCTCCTT
CGCAGTACGCATCGTCACTGCGCCAGTGCGTCCTCCTCCAGTATCTTCAG
TTGACAGCAATCCACTGGAGAAGCAATTCGATGAACCTAGGTCAGCATTT
TAGCTTGGAGCAAGAATCGAACATTAAAAGGATGACTAACTCTCCGCACG
AGAACAATGCTTTCTTCGCACTGAAGTACGACATGCAGACCTGTGTTTGC
GATCCGGAAGGGTCCTTGCAGAACAGGGAAACGCGCATGA
FMO01159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup50-RA | 1907 | CG2158-RA | 103..1250 | 9..1125 | 4845 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8123419..8124196 | 234..1002 | 3455 | 98.1 | Plus |
| 2R | 25286936 | 2R | 8123138..8123365 | 9..236 | 1140 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6880 | 502..577 | 110 | 64.1 | Plus |
FMO01159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:57 Download gff for
FMO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2158-RA | 123..1166 | 9..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:58 Download gff for
FMO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..1146 | 9..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:52 Download gff for
FMO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..1146 | 9..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:52 Download gff for
FMO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8123138..8123363 | 9..234 | 100 | -> | Plus |
| 2R | 8123420..8124237 | 235..1037 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:58 Download gff for
FMO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4010643..4010868 | 9..234 | 100 | -> | Plus |
| arm_2R | 4010925..4011742 | 235..1037 | 97 | | Plus |
