FMO01160.5prime Sequence
1143 bp (918 high quality bases) assembled on 2008-03-04
> FMO01160.5prime
CAGTCGACATGGAGCCCATTGACATTGCGCGTCTGGAGGAGGCGGTCGTG
TCGTTCTACCGCTCGAACTCGCAGAACCAGGCGATCACCCATGAATGGCT
TACCGATGCGGAGGCCAGTCCACAGGCCTGGCAGTTTTCCTGGCAGCTAA
TGCAGCTCGGCAAGAGTCAGGAGGTGCAGTTCTTCGGCGCCATCACGCTG
CACTCCAAGCTTATGAAGCACTGGCACGAAGTGCCGCCAGAGAATCGCGA
GGAGTTAAAGCAAAAGATACTCGAATCCATCGTTCGCTTCGCTGGCGGAC
CGAAGATCGTCCTCAATCGGTTGTGCATCTCGCTGGGCGCTTACATCGTT
CACATGCTGGGCGAATGGCCCGGCGCCATCGAGGAGGTGATCAACACGTT
TCAGAATCAACGGATGCCAAATGTCAGCGCCGATGTGCAATTGTGGATCA
TGCTGGAGGTGCTGACCGCCATTCCCGAGGAAGCGCAGGTCATACATACG
TCTGTCAAGCGGGTTGTTCTGCGCGCCGAGATCGCCAAGCGAGTGCAGTT
GGTCATTCACACCGTTGAGCGATATCTGAAGCTGCAAATGAACCGCGTGT
GGGATGCCGAGGCGTACAGTAACATGAACAGGGCCGTTAAGTGCGTCGGC
ACCTGGATCAAAAACATCGGCTACACCATTGAGGGCTGCGTCACCATCAC
CGCCGTGCTCCTGGAAGTGGTGCACAAGTGCTATTGGCCCTGCATACACG
CCGGCGACGGCTGCATGACCGCCGATGAGAACGAACTGGCCGAGTCCTGT
CTGAAGACCATGGTGAACAATTATCATCCAGCCAGACTGCCACAACTATC
CCAAAAACCGGCATTTGTGCTTATAAAAATGTTCCTGGACTCGCTATCCG
AAATCACAAAGACGGAATGGAAGAGGGAAAACGACACGAGGGACATTATC
GTACATATCTACATGCTTGTTCGTCTTCTTCGTGGAGCGACATTCGAACG
CTGTTGCTCAGCGGCATCCCGTCGCGAAACCGGAATTGTTATCTAATGCA
TCGCATCGGCAGAAAATCCCCCATGACCGACAAGCCGGACTTACCGGTGA
AAGAAATTCCTGAGACCAATGGTCTGTGGCGTTTTGGATATAT
FMO01160.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdm-RB | 3691 | CG7212-RB | 132..1269 | 7..1143 | 4920 | 96.4 | Plus |
| cdm-RA | 3253 | CG7212-RA | 132..1269 | 7..1143 | 4920 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18182596..18183094 | 661..163 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 18182160..18182533 | 1039..662 | 1420 | 94.7 | Minus |
| 3R | 32079331 | 3R | 18183191..18183348 | 164..7 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:14 has no hits.
FMO01160.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:13 Download gff for
FMO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7212-RA | 126..1197 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:28 Download gff for
FMO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1197 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:55 Download gff for
FMO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1197 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:55 Download gff for
FMO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18182123..18182533 | 662..1073 | 94 | <- | Minus |
| 3R | 18182596..18183092 | 165..661 | 100 | <- | Minus |
| 3R | 18183191..18183354 | 1..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:28 Download gff for
FMO01160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14007845..14008255 | 662..1073 | 94 | <- | Minus |
| arm_3R | 14008318..14008814 | 165..661 | 100 | <- | Minus |
| arm_3R | 14008913..14009076 | 1..164 | 98 | | Minus |
