FMO01161.5prime Sequence
1206 bp (976 high quality bases) assembled on 2008-03-04
> FMO01161.5prime
CAGTCGACATGTCGCTCAAGCCCAAAATAGTGGAGTTTGTCGATGTTTGG
CCGCGCCTGCGCTGCATCGCCGAGTCGGTGATAACGCTCACCAAAGTGGA
GCGCTCGGTGTGGAATACTAGCTTCAGCGACGTTTACACACTGTGCGTGG
CGCAGCCGGAACCGATGGCTGATCGTCTTTATGGCGAAACAAAACACTTT
CTTGAGCAGCACGTCCAGGAGATGCTGGCCAAAAAGGTGCTGATCGAGGG
AGAATGCTCCCATTCCAATGGTGGCCCAGACCTTCTCCAGCGTTACTACA
TCACCTGGATGGAATATAGCCAGGGTATCAAGTATCTGCACCAATTGTAC
ATCTACCTGAATCAACAACACATCAAGAAACAAAAGATTACCGATACGGA
ATCGTTCTACGGTAATCTGTCAAGCGATGCTGCGGAGCAGATGGAGATTG
GCGAGCTAGGTCTAGACATTTGGCGCCTGTATATGATTGAGTACTTGTCC
AGCGAACTGGTCCGTCACATACTCGAGGGCATTGCCGCAGACAGAGCTAG
CAATGGCACCTTGGATCACCATCGCGTGCAAATTATCAACGGAGTGATAC
ACAGCTTCGTGGAGGTACAGGACTATAAGAAAACAGGCTCGCTTAAGCTC
TACCAGGAACTCTTTGAAGGCCCCATGCTGGAGGCCAGTGGCGCCTACTA
CACAGACGAGGCTAACAAGTTGCTCCATCGGTGCTCAGTGTCGGAGTACA
TGCAGGAGGTTATCCGGATACTGGAATATGAAAGCCGGAGAGCCCAAAAG
TTTTTACACGTCAGTTCCCTGCCAAAACTACGTAAAGAGTGCGAGGAGAA
GTTTATTAACGATCGTTTGGGCTTCATCTACTCGGAGTGCGCGAAATGTT
TCAGAGGAGCGGCGCCAGACTTACGCACATGTACGTCGTACTAAAGCCCA
TACCCGATATCTCAAGTCTGAGCTCATACCACCTTCCTCGATCACATCAA
AGTGAAGTCTGCGAACCGTATCTGGCGCCTGAAGGGCGAAACCATCCATA
TTGCGTTCGTAAAGAAATATGTTTGAGTTACTCCAAGGTACCAGAGCTGA
TATCCGAACGCTTTCGAACGATTCTTATTCTGAAAGCCATAGAAGGCGTG
CACGTTACATGCCGTCATCGAGCGAGCCTTGCGGTTAAGGCGAAGAATAG
TTGCGC
FMO01161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul2-RB | 2831 | CG1512-RB | 177..1279 | 6..1101 | 5055 | 98 | Plus |
| Cul2-RA | 3426 | CG1512-RA | 284..1386 | 6..1101 | 5055 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21660123..21660842 | 353..1066 | 3055 | 97.8 | Plus |
| 2L | 23513712 | 2L | 21659838..21660064 | 126..352 | 1135 | 100 | Plus |
| 2L | 23513712 | 2L | 21659151..21659272 | 6..127 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:28:37 has no hits.
FMO01161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:24 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:05 Download gff for
FMO01161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-2-RA | 279..1364 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:56 Download gff for
FMO01161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul2-RA | 279..1364 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:56 Download gff for
FMO01161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21659146..21659272 | 1..127 | 98 | -> | Plus |
| 2L | 21659840..21660064 | 128..352 | 100 | -> | Plus |
| 2L | 21660123..21660873 | 353..1096 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:05 Download gff for
FMO01161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21659146..21659272 | 1..127 | 98 | -> | Plus |
| arm_2L | 21659840..21660064 | 128..352 | 100 | -> | Plus |
| arm_2L | 21660123..21660873 | 353..1096 | 97 | -> | Plus |
