FMO01162.5prime Sequence
1223 bp (981 high quality bases) assembled on 2008-03-04
> FMO01162.5prime
CAGTCGACATGGAGAGCGAGAAGATTCTAATGGCCGCCGGAGTGACGGTA
GCCGCCGTAGTCGGAGCCTTCGTTTTCTGGGGTCCTTCGGGTTCCCGTTT
GCGTCAACGACGCGGCCAAATTGCCGGTCTCCACAACTTTGGACTGACCT
GCTTCCTAAACACCCTGCTACAGGCGATGGCCGCCTGTCCCCAGTTCATT
GCCTGGCTGCAATTGTACAACAACGCCTCGCCGGATCGAAAAAGCTTAAT
TACGTCGATGTTAAACACTCTGGAAGTGGTCAATGGCACCCATGCCACTC
TGCGCGGCGATCCCTATTCACCGGGAGCCGTTCTCCGGGCTCTGAATGCC
CTGGGCTGGGTGATTCCACAGGAGGAGCACGACGCCCACGAGCTGTTCCA
CGTGCTATTGACCTGCCTGGAGGAGGAGGCCATACGACCACAGCCCCTCG
GCTGTCTGTCGGATGCTCTGCCCACGGATAACGATGATAACAGCAGCTTG
GCAGGCACAGCAACGCCAGTAGGGGGCTTTCGATCATTTAGCTCCATGGC
AGCGGGACTGGGAGCCAGCCAGAGGATCGGGGATCAACCGAACCGGCCCT
CCAGTGCCATGCTCACTGATTTCTTAAACATGGAGTATGATGAGAGCACC
AGTTTGCAGCGATTGGTGCGTTCCGAGGCCCACACACCGGATTCGCCTGC
CTCTGTTTGCGAACGCGACGGAAACGATCGCCTGGGATCCGTGCTTCTGG
ATGCCGTTTCGCCAGGGACACCCTTTGGCTTTCCGCTCGTCAGCAATCCG
GATTCCTTGGCTACGCCTATGTTGGGCGGCGAGCGTTCGTCGCGACCGCG
ACTTCCACAATCCCAACAGCAGCAGGATGAGGGTCTGAATCGCCGGTGTC
CAGCTCCTGTCGATCGCTAGAGCGCCTGCATCGCGGACCAGGTCGGTGTT
CATCTGGTCCAACATGATGCCCAGCCAAGTGGCCGCATCCGTTTCAGGCG
CCATTGGGCCACAGATCGTGTGCCATGCCTGCGCCTCCAAGTCGCCGTCG
TACGATAGTCCAACGCATAACGCTAAATCTGCCCGCCGCCCCGCAGACTT
GCTTGGATTTGGCCATGTCTTAGCGATATTCATCGAAGAATCTGACGTGT
CAAGTTATCCTGGCACGGATCATCGACGTCAACTCTAATGTCGGTACTGT
CTGCTCATAACTACCGTGAGTTG
FMO01162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-RB | 2267 | CG3016-RB | 160..1322 | 8..1155 | 5090 | 96.9 | Plus |
| CG3016-RA | 2436 | CG3016-RA | 329..1491 | 8..1155 | 5090 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5878367..5879323 | 1044..90 | 4485 | 98.9 | Minus |
| X | 23542271 | X | 5879375..5879459 | 92..8 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:07 has no hits.
FMO01162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:22 Download gff for
FMO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 370..1479 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:41 Download gff for
FMO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 324..1433 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:35 Download gff for
FMO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 324..1433 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:35 Download gff for
FMO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5878301..5879322 | 91..1105 | 97 | <- | Minus |
| X | 5879377..5879462 | 1..90 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:41 Download gff for
FMO01162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5772334..5773355 | 91..1105 | 97 | <- | Minus |
| arm_X | 5773410..5773495 | 1..90 | 95 | | Minus |
