FMO01163.5prime Sequence
1219 bp (965 high quality bases) assembled on 2008-03-04
> FMO01163.5prime
CAGTCGACATGTCTGGAAATCCTTTCGACAGCGACGAAGATCAAAGCTCG
GCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGCCGTGCGGA
TCTCAAGTCCATCGATGTGCTCACGGATCATTTTGCCCGCCAGCATGCGG
AAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCAAGGCGAAA
AAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTGCATCTGTATCGTC
GCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAATGGCAACG
GAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATGTATTTAAC
TATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTCGAGTACTT
TCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAGCGAAACAAACA
AACTAATCATTCGTTTGCACCGCCTGCTTAAGGATCTGCCAGCGGATTCA
GTGCAGCGGCGTCAGCATGAACAGCAAACAGTTGCCTGGCTGGATGGTAG
TTCCGTCAAGTTGTGTCCCAGTTGTGCCAAGAGTTTCCACATCGCCCGAA
GACAACACCACTGCCGTTTGTGCGGAGGCATAATGTGCAATGATTGCTCC
AAGTTCCTGCCCCTGGAAGATGCCATGCAACTAGCCAGTCTTTCCACCAC
AAGAAGCGAGCCCCTTCAGCAGCTGCATCAGCATGAGAACGCCATCCGGC
TGTGCGAACACTGCCTTTGGCTGCTGGACACCCGAAAGGATATGCACGAA
AGTCGCACTTGTCGCCCACTCCTCGTCCAGGTCTACGACAAATTCGTCAA
CTACAAAAGAAGTTACCCCGGATCTGGACATGTATCTAAAGATCATCAAT
AGCTTGAACGAAAGGGAACCAATCTTCCCGTTGGCGATGCAGGTGCTTTG
CGCGGCAAGATTGGACAAGTGCAAAGGCCATGGACATGAGGAGCAGCGCA
TTCTAGCCATAATTTTGTGAACAGCAGCCGGAGGAGGCATTAAGAAGCCA
TTCGTTGGCTGCATCAGCATTCAAGGACGATGTTATCCTGCCCCCCTGCT
AGAATCGCAATACCCGATGCGGAGCGTGAGCATGAACGACCGATTCCTCC
CAAGCAGCCTGGAACTGAAAATAATGCATACATTCATTGGATCTGGTCGG
AGGGACTTGCCAGGGGCGA
FMO01163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbsn-5-RA | 1846 | CG8506-RA | 261..1372 | 9..1103 | 4980 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8160092..8160758 | 9..675 | 3335 | 100 | Plus |
| 2L | 23513712 | 2L | 8160817..8161161 | 676..1015 | 1385 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:00 has no hits.
FMO01163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:08 Download gff for
FMO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8506-RA | 247..1321 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:41 Download gff for
FMO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 254..1328 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:36 Download gff for
FMO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 254..1328 | 1..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:36 Download gff for
FMO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8160085..8160758 | 1..675 | 99 | -> | Plus |
| 2L | 8160817..8161217 | 676..1065 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:41 Download gff for
FMO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8160085..8160758 | 1..675 | 99 | -> | Plus |
| arm_2L | 8160817..8161217 | 676..1065 | 95 | | Plus |
