FMO01165.5prime Sequence
1214 bp (962 high quality bases) assembled on 2008-03-04
> FMO01165.5prime
CAGTCGACATGGCCACAAAACCGGGAAAAGGTGACGGCAAGCAGGTGAAG
GGAAAAAGGACCTCCAAGAACAAGACAGATGGCCCCGGCGGTGGTGGCGG
CGATGCCGATGACTTCGATGCCTGGATGAAGTCGCGCCAGCTGCTCAAGC
CCGATGACCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGGAGATCACC
AAGGTGCTGACTCCCACCAACACGAACATCGTTCGCAATCTCGTGGTCTA
TAGCTTCAAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGGCAATACGG
TCACCCTAATCGCCTTTGCCGGCAACTCACTTCACGTGGACTCCGATGAG
GGTCGCCGTCAGATCGAGGAGTCCGACGAGATTGGCTACCCACTGCCCAT
GCCCAACTACACTGTGGTGGAGCAGCGCGAGACGGATAACGTCGACGGTG
AGGAGGGAGAGGGCGAGGAGGATGATGATGGGGCCACCGCAAAGGACGCC
GCCGTAGAAGACGAGGATGTCGAGGAGGAGGACGACGAGGAGGCCAAGGG
CACCGAAGGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGGTGCTGCTG
CCCGCCAGGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCGTTTCATCC
AAGAAACGCAAGCTAATCAACCAGTTCAACTACTGCGAACGTGGTGCCCT
CACCTACACAAATCCCAAAAGGAATGTAGACACCCAGACCATACCCCCAC
CCCGTTCCCAGTTTGGAGCCAATGTGCTGCAGTGGGTCATCTATGATTCC
TATATGGAGAACTTTGCGGAGTCCCAGAAGGACGGCACCAAGAAGGAGGA
GCGCAAGCGCGGCAGAGGGAGAAGAGTTCCGGGATAGTCGGGCATTGCCG
AGCAGCTCACAAGAAGTATCTCCAATGCTGGCAGATACTCGAGCGCATGA
TCATCAGATATCTACGATGACATCGCTACGACTATCGCTACGGGAGGATC
GGCTGATGAGTTCTGGAGGGTGAGGGCACCTGCTGCCCTCTGGAAGTTCA
GTACACACGATGAGATGAGGTCACGAATCCTGTCAATCCAGCATATGATC
TTCCCGCGTTCGATGCATGTTCGGACGAACATGAGGTACTGGTCGTCACG
TAGATCCATCCGGACTAATCACACTGGGGTAGGGTGACTACCAAGATCCT
CGGCCTACGTCCTA
FMO01165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-RC | 3069 | CG9313-RC | 606..1664 | 9..1054 | 4895 | 98.3 | Plus |
| CG9313-RA | 2649 | CG9313-RA | 186..1244 | 9..1054 | 4895 | 98.3 | Plus |
| CG9313-RB | 2652 | CG9313-RB | 186..1247 | 9..1054 | 4855 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20981311..20981741 | 57..487 | 2155 | 100 | Plus |
| 2R | 25286936 | 2R | 20981801..20982035 | 488..722 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 20982096..20982434 | 722..1048 | 1020 | 95 | Plus |
| 2R | 25286936 | 2R | 20979506..20979553 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:24 has no hits.
FMO01165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:25 Download gff for
FMO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 156..1234 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:30 Download gff for
FMO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1257 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:50 Download gff for
FMO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1257 | 1..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:50 Download gff for
FMO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20981313..20981741 | 59..487 | 100 | -> | Plus |
| 2R | 20981801..20982035 | 488..722 | 100 | -> | Plus |
| 2R | 20982097..20982454 | 723..1068 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:30 Download gff for
FMO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16868818..16869246 | 59..487 | 100 | -> | Plus |
| arm_2R | 16869306..16869540 | 488..722 | 100 | -> | Plus |
| arm_2R | 16869602..16869959 | 723..1068 | 93 | | Plus |
