FMO01166.5prime Sequence
1224 bp (1007 high quality bases) assembled on 2008-03-04
> FMO01166.5prime
CAGTCGACATGGACGAATCCTCGAGAAAGCACATGGAGGACTGCTTCCTA
CGCAGTCCCAGCGACATCCGTACCACCAACGTGCCCGCGGCGCCTAAATC
GCAGGCGGCTGACAACAAGTCTCGGAAAACGGAGCTCCACGTCCTTCGGC
TCAACGATGAATCCCGCCAGATGACCATGGACACGCTGCGCCAAATCCAC
GGCCCGGAATTCCAGCTGGACGACATCAGCAAGTACAAGGATCGTGGACG
CGGAGGTCATGGCGTGAAGCACTCCTACTGGCAGGATCGCGGCACCCTGG
TGGTGCAGAGTGTCCAGGGCGTGAGCTCAACGCGTGGCAACGACAGTGAT
GGTGATCGCCTGCGCCGATATGCCTTGGCCAAACTGGAGAACTACGGATT
TCAGGCTGTCCACTGCCTTGAAGCTTATGAGCACTGCTCCGGCGACACGG
AAGCCGCTCTACTGCTGCTCTACCGTCGCTATATGAGAATTCCCGATGAG
GAGCAACTGACTCTCGAGCCACCCAGCGAGCAAGAAATACTGGACATGCG
CGCCGACGAGAAGGAGGCCCTGGAGTCCATCTTCGATAAGGCGTACGAGG
AGCGCGAGGCGAATCGCGTGTGGAACCTAAAGTTTCGCATCGACCATCTG
CTGGCCCACAGTCCGTCGGAGGTGCGAAAGGCCAGGGAGGCGGTCCTGGC
CGCCGCTGCTGCTGCTGCCCAGGCGGCGCTCGACAAGAAGAAAAAGCCTC
CTCTACGTTGTCGCAATTTCGATCGTGACGGCACCTGTAAGTACGGTCCC
AAGTGCCGGTTCGCTCACCTGCCGCAACAACCCACTGAATCGGACACGAC
CAAAAAGGATAGCGTTGACGAGAACGATAACGAGCTGTGGTTTCACGTGA
AGTGCGCTTTCCGCCAGGCAGTCGCTATCCATATGAGCGCCTTTCATCTA
CCTGAAACCACTTGCCACGACATACCGCACGAACTGCGCCTCCGGTATGC
CCGCCATCTCTACAGGAGCCAAAGAGAATATGCCGGGATGCATCCTGGTG
TAAACAGCATATGCGACCTGCTGCAGTCAATGAAAGCTGGCGGACAACTA
GAACCGCTCTGCTTTTCCCTCGCCAGGATACCCTCTTCACGAATGATGCG
GGGCGTGAGTGAATCCGAAGTCGAATTATCAAATCGGAACATGCAATGAG
TGTTCACCTCGCATAGTAGTAGAG
FMO01166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1582-RB | 4184 | CG1582-RB | 45..1176 | 1..1124 | 5250 | 98.2 | Plus |
| CG1582-RA | 4036 | CG1582-RA | 104..1235 | 1..1124 | 5250 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10898282..10899063 | 858..77 | 3910 | 100 | Minus |
| X | 23542271 | X | 10897996..10898222 | 1078..858 | 705 | 93.4 | Minus |
| X | 23542271 | X | 10899124..10899199 | 76..1 | 350 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:44 has no hits.
FMO01166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:41:26 Download gff for
FMO01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1582-RA | 104..1235 | 1..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:36 Download gff for
FMO01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1582-RA | 104..1235 | 1..1124 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:30 Download gff for
FMO01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1582-RA | 104..1235 | 1..1124 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:30 Download gff for
FMO01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10897948..10898221 | 859..1124 | 93 | <- | Minus |
| X | 10898282..10899063 | 77..858 | 100 | <- | Minus |
| X | 10899124..10899199 | 1..76 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:36 Download gff for
FMO01166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10791981..10792254 | 859..1124 | 93 | <- | Minus |
| arm_X | 10792315..10793096 | 77..858 | 100 | <- | Minus |
| arm_X | 10793157..10793232 | 1..76 | 97 | | Minus |
