FMO01167.5prime Sequence
1235 bp (1008 high quality bases) assembled on 2008-03-04
> FMO01167.5prime
CAGTCGACATGACACAGCGTTTCGATGACTGCGAACAAGTGATCACCGAT
GGCAGGCGAAACTTCGACAGCGAAATCCTTTCACCGCCCGGCAATGACGA
AATCAAGGAGGATCAATGGATGGGCGTTACGGTGCGTTCGAATCCCCTAC
AGGCCAACGGATCCGGCGGAAAGGTAATCGTCTGCGCCCATCGCTATATG
TACATCGTCCGAGAGAATCGTTATGGACAGGGTCTCTGCTATCTCCTAAC
GAACGATCTGCAATTCGAAGAGGTCCACGAGCCCTGCAAAGGACGACCTG
TGCAAAGGCAACACGAAGATTATGGACTGTGCCAGGCGGGCACATCGGCT
GCCCTACTGGACGATGACACCATGGTGTTGGGTTCCCCTGGACCGTACAC
ATGGCGCGGATCCATTTGGGTGACTCAGGTGGGCGGGGAGTACCTGCAGC
GCGACAAGACGACCTACTACAGTGATCATTCGGACTTGAATTCGCCGGTG
GACAAGTACAGCTATCTTGGTATGTCGGTGACCGGTGGCAGATTCTTTGG
TCACATGTCATATGCGGCTGGAGCTCCACGATCCGAGGGTCATGGACAGG
TGGTGATTTTCGACAAGTCCACCGATAATCCAATACCGGTGCACTCGATC
CTGGATGGTGAGCAATTCGGTTCGAGTTTTGGCTATGAACTGGCAACCGC
CGATATAAACGGAGATCACAGGCCGGATTTAATAGTGGCAGCTCCTTTGT
ACTTCACAAAAACGGAAGGTGGAGCTGTGTATGTGTACCAGAATATCCAG
GATACGTTGCCCATGAAGTACACACTCAAGTTGACGGGACCTCTGGAGAG
TCGTTTCGGTCTGGCGTTGGCCAATATCGGAGATCTGAACAAGGATAACT
GCGAGGATCTGGCCGTGGGAGCACCATACGAGGGCAACGGCGTAGTCTAC
ATCTACTTGGGCTCCGAGTCAGGGCCTGAATTCCAGGCCGCCCAGAAAAT
CCAGGCCTCGGAACTGGGTGGAACATACCAATGGTCAACCGATTCGTACC
TTTGGCATCTCTTATTCCGCCAACGGACTGGATGATAATCCATCGGGATG
GTATCGGAACATCAATCCTCGGAGCGTAATCTGCTGCCGACCTTCTCGCA
TCGACAAGGTACGCAGACGCTACTGGATCCAAGCTGGGTGTGCATTCGGC
GAAATCTCCTGTTACGGTTAGACGTGTGTTCGCAA
FMO01167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mew-RE | 3863 | CG1771-RE | 253..1395 | 9..1136 | 5200 | 97.9 | Plus |
| mew-RF | 4254 | CG1771-RF | 644..1786 | 9..1136 | 5200 | 97.9 | Plus |
| mew-RB | 5001 | CG1771-RB | 644..1786 | 9..1136 | 5200 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13217908..13218666 | 1062..306 | 3570 | 99.2 | Minus |
| X | 23542271 | X | 13219747..13219883 | 308..172 | 685 | 100 | Minus |
| X | 23542271 | X | 13220030..13220146 | 177..61 | 585 | 100 | Minus |
| X | 23542271 | X | 13224984..13225035 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:44:32 has no hits.
FMO01167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:10 Download gff for
FMO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1771-RB | 625..1706 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:19 Download gff for
FMO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 637..1718 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:06 Download gff for
FMO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 637..1718 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:06 Download gff for
FMO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13219748..13219881 | 174..307 | 100 | <- | Minus |
| X | 13220034..13220146 | 61..173 | 100 | <- | Minus |
| X | 13224984..13225040 | 1..60 | 93 | | Minus |
| X | 13217889..13218664 | 308..1079 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:19 Download gff for
FMO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13114067..13114179 | 61..173 | 100 | <- | Minus |
| arm_X | 13119017..13119073 | 1..60 | 93 | | Minus |
| arm_X | 13111922..13112697 | 308..1079 | 98 | <- | Minus |
| arm_X | 13113781..13113914 | 174..307 | 100 | <- | Minus |
