FMO01169.5prime Sequence
1246 bp (1006 high quality bases) assembled on 2008-03-04
> FMO01169.5prime
CAGTCGACATGGGTTTAAATGCCAAGAGTGTTTGTTCTACCAGCAGCACT
GAGCCAAATGGCAGCATAGTCACAACCGCCCCCAGCAACGGAGAAGTGAG
CAGCAGCATAGTCGTCGTCGTCAGCAGCAGTAGTATCAGTAGCAGCAGCG
ATAGCCCAATCGCTATCCTTCCACATCCAGATCCAATCCCATCAACATCG
TTCTCTTCAGCGTCGCAACGAAGTGAAGAGGAGCTACCAGGAACCTCAGC
AGCCTCCAGAACCGACGAGATGTGCTCTTGTGATAGCCAGAATCTTGCAG
CATCCACAGCCGCGACTTCCAATGGCAATAAACGTAAACGGCGTTTAAGC
AGCGATTCAAACGAGGACCCTGAACTCGGTTTTGAGCCTCCATCAGCTAA
GCGCCAGCAGCGACTGCCCGCTTTGTACGGCAGCGAGCAGGGCAATCTGT
CATCGGTTGCCTCCTCGGTCTACACCTCGCCCGTTGTCTCGGTTGATGGC
CAGAGTACCCAGGAGCTGCTCAGCATACGTAGCTCACCGGCCGAGGATCT
GTCGGAGGCGCCACACAGTCCGCTGCCGGACAGCCCGGACAGTCCGCCGA
GTCCGGATCGTGGAAGCAAGCAGACGCCAGTGGTGGTGCGCTACGCTGCG
GAGCAGGTGGTGACCAGTACGGTGGTCACGCAGAAGACGGAGGATGATGA
CCTTTTGGACGACAGCTGCGAGGACTACTCGTACGACGAGGATGATGAGG
ATGACGTTGAGGAGGAGGACGACGACGTGGAGATCTACTCCTCCACAATT
TCTCCAGCCTCCTCCGGCTGCAGCCAGCAGCAGCGGTGAATGGAGAGCGT
ACTCCCGGGCCTGCCAAACATCAGGAGCAGATCCATCATCCGGTCAGTGA
CCTGATGATTAACATGCGGACGCCCATGTCGCGGCTGTGGAGAACGGTCT
GCGCCAGTGCCCACTTCTTGCGCTCGCCTGGGCTAACGCCGCCGATGTTT
GGGGCCTGATGTGTCACGGGATGAGCAGGATTCGCGTCTGCGCCACATTT
CGATAGCTGAACGCATCTGGACGGCACCACGTATGGCGTGCCATTCCTTG
ACTGGTGATCCGAGTGGGAGTTACAGCTGCATTGGGAACCTGCATCTGGG
CCGCCATATCCTGGATGATGCATGGGCCTAGTGCAAAGAACACTGCATGA
TCTGGCTCACGTTGCCTGTGCTTGGGGTCCACGGTGGGGAAGAAAA
FMO01169.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycE-RD | 3946 | CG3938-RD | 517..1621 | 9..1106 | 5110 | 98.2 | Plus |
| CycE-RE | 3703 | CG3938-RE | 274..1378 | 9..1106 | 5110 | 98.2 | Plus |
| CycE-RA | 3653 | CG3938-RA | 427..1531 | 9..1106 | 5110 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15730145..15730838 | 1054..364 | 3170 | 98.1 | Minus |
| 2L | 23513712 | 2L | 15737627..15737966 | 366..27 | 1700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:31 has no hits.
FMO01169.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:18 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:29 Download gff for
FMO01169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..1489 | 9..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:38 Download gff for
FMO01169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..1489 | 9..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:38 Download gff for
FMO01169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15730091..15730836 | 366..1104 | 97 | <- | Minus |
| 2L | 15737628..15737964 | 29..365 | 100 | <- | Minus |
| 2L | 15740772..15740791 | 9..28 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:29 Download gff for
FMO01169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15730091..15730836 | 366..1104 | 97 | <- | Minus |
| arm_2L | 15737628..15737964 | 29..365 | 100 | <- | Minus |
| arm_2L | 15740772..15740791 | 9..28 | 100 | | Minus |
