FMO01170.5prime Sequence
1216 bp (980 high quality bases) assembled on 2008-03-04
> FMO01170.5prime
CAGTCGACATGGATAGCTTGGAGAACGACCAGGAGGAGCTGCACCACCAG
CCGAGGGTCACCTTGGCGTACGGCAGTGTGGCCACCAGTTCGGGTGGACA
GGAAAACCATTCCCAGTATGCGATGTACTATAATCAGCAGAGGGATTCGG
AGGGCTACATGCTAATGACGCCCTTCCTGTCCAGTTCGCAGAGCCACAGC
CACACCCGTTCGCCGCCCACGTACACCGCCATGGTGGAGCCACGTCGCGA
AGAGAGTTCTGGATTTGAGGGCTTGGCCAGGCGGTGTGACAAGTGCAGTT
CGCTGGACGGACTCTGCCGCTGCGAATCGATGGTGGCCAGTAGCAGTCGC
TATGCGGACTCCACGCAGAACCAGTCGCATTCGGAGGCTCAGTTCTTGGA
GCAGCCCTCATCCTCCACAGCGGCGATCGCCAATCCGCCCGCTGTTCATT
CCATTCCACGACCCAAGCGAAAGAAGACTGAACCCCTGACAATGGAGCCA
GAGAGTGACAATGACGGCGACGCGGTGGTTGCGTCCGTCAGCGGCACATG
GCCTGCCGGTGCTATAGAAGAGCATGCTATGGACTCTACGGCGGTCGTTT
ACGAGGTCCCCTCTAGTTCGCTGCAGCTCAGCAACAGCTCCTTCGAAACC
GCCCCAAGTGCCGTAAATGCTTACGATGATGTGACATCGAGTGCCTCGGA
CACGGAGCACGGCCAGTTTGCTCATACGCGTACCACCAACACCACGACGA
CTACGTCTGCCGTTCAGGCTCACAAGAAGAAGGCCAGCCGCTCCAATAAT
GCCTTCAACACCTCTTCCAGAGCAGTAGATACGGATGCCACGCCAAGCAC
GAGTGCCCAATCGAGAAAGCGACAGATGAGTCAATTTCTTATCGCAAATC
AAGGTTTTGGAGCCGGAAAACGAGAGCAGCGATGATGGCTGGGATTTGCG
GGTGCATAATCCCGTTCCACCAATTGAGCCCACAGTAACGATAATCCGGG
TAGCAAGGGGTCGGACCAAGCCGAAATAAGCCCTACGGATCACAACTACT
ATAATAGTCGTGCGCTGTGGCGGAGACTCCCACGATAGTACCTCAATTAG
TCAGCTCCTGGCTCCCAGCCACCCATCTACCGTAGCGTGATTATGAATTG
CATGTCCAGGTGCGCTGCACGGATACCGCCCAAGCTCGTACAGAACCGAG
CGCACGGCCTCAACAA
FMO01170.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6923-RC | 4629 | CG6923-RC | 403..1549 | 9..1145 | 5140 | 97.3 | Plus |
| CG6923-RD | 4544 | CG6923-RD | 318..1464 | 9..1145 | 5140 | 97.3 | Plus |
| CG6923-RB | 4363 | CG6923-RB | 137..1283 | 9..1145 | 5140 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11747766..11748734 | 1073..109 | 4465 | 98.3 | Minus |
| 3R | 32079331 | 3R | 11748790..11748889 | 108..9 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:41 has no hits.
FMO01170.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:24:23 Download gff for
FMO01170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6923-RA | 286..1383 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:23 Download gff for
FMO01170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6923-RB | 129..1214 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:12 Download gff for
FMO01170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6923-RB | 129..1214 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:12 Download gff for
FMO01170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11747763..11748734 | 109..1077 | 98 | <- | Minus |
| 3R | 11748790..11748894 | 1..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:23 Download gff for
FMO01170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7573485..7574456 | 109..1077 | 98 | <- | Minus |
| arm_3R | 7574512..7574616 | 1..108 | 96 | | Minus |
